Robert D. Finn

Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn: Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Research 41(Database-Issue): 70-82 (2013)

Robert D. Finn, Paul P. Gardner, Alex Bateman: Making your database available through Wikipedia: the pros and cons. Nucleic Acids Research 40(Database-Issue): 9-12 (2012)

Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn: The Pfam protein families database. Nucleic Acids Research 40(Database-Issue): 290-301 (2012)

Sarah Hunter, Philip Jones, Alex Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Muellenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong: InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research 40(Database-Issue): 306-312 (2012)

Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman: Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research 39(Database-Issue): 141-145 (2011)

Robert D. Finn, Jody Clements, Sean R. Eddy: HMMER web server: interactive sequence similarity searching. Nucleic Acids Research 39(Web-Server-Issue): 29-37 (2011)

Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 38(Database-Issue): 211-222 (2010)

Alex Bateman, Robert D. Finn, Peter J. Sims, Therese Wiedmer, Andreas Biegert, Johannes Söding: Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics 25(2): 159-162 (2009)

Hagen Blankenburg, Robert D. Finn, Andreas Prlic, Andrew M. Jenkinson, Fidel Ramírez, Dorothea Emig, Sven-Eric Schelhorn, Joachim Büch, Thomas Lengauer, Mario Albrecht: DASMI: exchanging, annotating and assessing molecular interaction data. Bioinformatics 25(10): 1321-1328 (2009)

Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman: Rfam: updates to the RNA families database. Nucleic Acids Research 37(Database-Issue): 136-140 (2009)

Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: InterPro: the integrative protein signature database. Nucleic Acids Research 37(Database-Issue): 211-215 (2009)

Stephen John Sammut, Robert D. Finn, Alex Bateman: Pfam 10 years on: 10 000 families and still growing. Briefings in Bioinformatics 9(3): 210-219 (2008)

Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman: Experience using web services for biological sequence analysis. Briefings in Bioinformatics 9(6): 493-505 (2008)

Andrew M. Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D. Finn, Henning Hermjakob, Tim J. P. Hubbard, Rafael C. Jimenez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José R. Macías, Gabrielle A. Reeves, Andreas Prlic: Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 9(S-8) (2008)

Robert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)

Alex Bateman, Robert D. Finn: SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics 23(7): 809-814 (2007)

Robert D. Finn, James W. Stalker, David K. Jackson, Eugene Kulesha, Jody Clements, Roger Pettett: ProServer: a simple, extensible Perl DAS server. Bioinformatics 23(12): 1568-1570 (2007)

Jaina Mistry, Alex Bateman, Robert D. Finn: Predicting active site residue annotations in the Pfam database. BMC Bioinformatics 8 (2007)

Andreas Prlic, Thomas A. Down, Eugene Kulesha, Robert D. Finn, Andreas Kähäri, Tim J. P. Hubbard: Integrating sequence and structural biology with DAS. BMC Bioinformatics 8 (2007)

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)

Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)

Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard: The Distributed Annotation System for Integration of Biological Data. DILS 2006: 195-203

Robert D. Finn, Mhairi Marshall, Alex Bateman: iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21(3): 410-412 (2005)

Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)

Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)