Nuno A. Fonseca

Nuno A. Fonseca, Johan Rung, Alvis Brazma, John C. Marioni: Tools for mapping high-throughput sequencing data. Bioinformatics 28(24): 3169-3177 (2012)

Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães: Predicting the secondary structure of proteins using machine learning algorithms. IJDMB 6(6): 571-584 (2012)

David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina Vieira, Nuno A. Fonseca, Jorge Vieira: ADOPS - Automatic Detection Of Positively Selected Sites. J. Integrative Bioinformatics 9(3) (2012)

Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho: Conceptual Clustering of Multi-Relational Data. ILP 2012: 145-159

David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira: On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. PACBB 2012: 225-229

Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos Adriano Gonçalves, Carlos J. V. Simões, Rui M. M. Brito: A Relational Learning Approach to Structure-Activity Relationships in Drug Design Toxicity Studies. J. Integrative Bioinformatics 8(3) (2011)

Pedro Ferreira, Nuno A. Fonseca, Inês de Castro Dutra, Ryan W. Woods, Elizabeth S. Burnside: Predicting Malignancy from Mammography Findings and Surgical Biopsies. BIBM 2011: 339-344

Pedro Ferreira, Inês de Castro Dutra, Nuno A. Fonseca, Ryan W. Woods, Elizabeth S. Burnside: Studying the Relevance of Breast Imaging Features. HEALTHINF 2011: 337-342

Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito: Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design. PACBB 2011: 355-363

Nuno A. Fonseca, Max Pereira, Vítor Santos Costa, Rui Camacho: Interactive Discriminative Mining of Chemical Fragments. ILP 2010: 59-66

Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães: Predicting the Start of Protein alpha-Helices Using Machine Learning Algorithms. IWPACBB 2010: 33-41

Nuno A. Fonseca, Ashwin Srinivasan, Fernando M. A. Silva, Rui Camacho: Parallel ILP for distributed-memory architectures. Machine Learning 74(3): 257-279 (2009)

Nuno A. Fonseca, Vítor Santos Costa, Ricardo Rocha, Rui Camacho, Fernando M. A. Silva: Improving the efficiency of inductive logic programming systems. Softw., Pract. Exper. 39(2): 189-219 (2009)

Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina Vieira, Jorge Vieira: Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach. IWANN (2) 2009: 1001-1004

Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca: Visually Guiding and Controlling the Search While Mining Chemical Structures. IWANN (2) 2009: 1043-1046

Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito: Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases. BSB 2009: 121-132

Nuno A. Fonseca, Rui Camacho, Ricardo Rocha, Vítor Santos Costa: Compile the Hypothesis Space: Do it Once, Use it Often. Fundam. Inform. 89(1): 45-67 (2008)

Vítor Santos Costa, Nuno A. Fonseca, Rui Camacho: LogCHEM: Interactive Discriminative Mining of Chemical Structure. BIBM 2008: 421-426

Pedro Pereira, Fernando M. A. Silva, Nuno A. Fonseca: BIORED - A Genetic Algorithm for Pattern Detection in Biosequences. IWPACBB 2008: 156-165

Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho: k-RNN: k-relational nearest neighbour algorithm. SAC 2008: 944-948

Rui Camacho, Nuno A. Fonseca, Ricardo Rocha, Vítor Santos Costa: ILP : - Just Trie It. ILP 2007: 78-87

Michel Ferreira, Nuno A. Fonseca, Ricardo Rocha, Tiago Soares: Efficient and Scalable Induction of Logic Programs Using a Deductive Database System. ILP 2006: 184-198

Nuno A. Fonseca, Fernando M. A. Silva, Rui Camacho: April - An Inductive Logic Programming System. JELIA 2006: 481-484

Nuno A. Fonseca, Fernando M. A. Silva, Vítor Santos Costa, Rui Camacho: A pipelined data-parallel algorithm for ILP. CLUSTER 2005: 1-10

Ricardo Rocha, Nuno A. Fonseca, Vítor Santos Costa: On Applying Tabling to Inductive Logic Programming. ECML 2005: 707-714

Nuno A. Fonseca, Fernando M. A. Silva, Rui Camacho: Strategies to Parallelize ILP Systems. ILP 2005: 136-153

Nuno A. Fonseca, Vítor Santos Costa, Fernando M. A. Silva, Rui Camacho: On Avoiding Redundancy in Inductive Logic Programming. ILP 2004: 132-146

Nuno A. Fonseca, Vítor Santos Costa, Fernando M. A. Silva, Rui Camacho: Experimental Evaluation of a Caching Technique for ILP. EPIA 2003: 151-155

Nuno A. Fonseca, Ricardo Rocha, Rui Camacho, Fernando M. A. Silva: Efficient Data Structures for Inductive Logic Programming. ILP 2003: 130-145

Nuno A. Fonseca, Vítor Santos Costa, Inês de Castro Dutra: VisAll: A Universal Tool to Visualise Parallel Execution of Logic Programs. IJCSLP 1998: 100-114