Dmitrij Frishman

Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis, Thomas Rattei, Mathias C. Walter, Dmitrij Frishman, Karsten Suhre, Manuel Spannagl, Klaus F. X. Mayer, Volker Stümpflen, Alexey V. Antonov: MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Research 39(Database-Issue): 220-224 (2011)

Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Frishman: DIMA 3.0: Domain Interaction Map. Nucleic Acids Research 39(Database-Issue): 724-729 (2011)

Pawel Smialowski, Dmitrij Frishman, Stefan Kramer: Pitfalls of supervised feature selection. Bioinformatics 26(3): 440-443 (2010)

Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman: TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinformatics 11: 292 (2010)

Pawel Smialowski, Philipp Pagel, Philip Wong, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Thomas Rattei, Dmitrij Frishman, Andreas Ruepp: The Negatome database: a reference set of non-interacting protein pairs. Nucleic Acids Research 38(Database-Issue): 540-544 (2010)

Andreas Kowarsch, Angelika Fuchs, Dmitrij Frishman, Philipp Pagel: Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions. PLoS Computational Biology 6(9) (2010)

Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman: PEDANT covers all complete RefSeq genomes. Nucleic Acids Research 37(Database-Issue): 408-411 (2009)

Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei: MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Research 36(Database-Issue): 196-201 (2008)

Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Normann Strack, Volker Stümpflen, Dmitrij Frishman: DIMA 2.0 - predicted and known domain interactions. Nucleic Acids Research 36(Database-Issue): 651-655 (2008)

Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, Dmitrij Frishman: Protein solubility: sequence based prediction and experimental verification. Bioinformatics 23(19): 2536-2542 (2007)

Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel J. Fleishman, Nir Ben-Tal, Dmitrij Frishman: Co-evolving residues in membrane proteins. Bioinformatics 23(24): 3312-3319 (2007)

Irena I. Artamonova, Goar Frishman, Dmitrij Frishman: Applying negative rule mining to improve genome annotation. BMC Bioinformatics 8 (2007)

M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans-Werner Mewes, Dmitrij Frishman: PEDANT genome database: 10 years online. Nucleic Acids Research 35(Database-Issue): 354-357 (2007)

Philipp Pagel, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman: The DIMA web resource - exploring the protein domain network. Bioinformatics 22(8): 997-998 (2006)

Thorsten Schmidt, Dmitrij Frishman: PROMPT: a protein mapping and comparison tool. BMC Bioinformatics 7: 331 (2006)

Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen: MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Research 34(Database-Issue): 169-172 (2006)

Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, M. Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes: The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. Nucleic Acids Research 34(Database-Issue): 568-571 (2006)

Philip Wong, Dmitrij Frishman: Fold Designability, Distribution, and Disease. PLoS Computational Biology 2(5) (2006)

Philipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman: The MIPS mammalian protein?Cprotein interaction database. Bioinformatics 21(6): 832-834 (2005)

Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman: The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinformatics 21(S3): 1 (2005)

Irena I. Artamonova, Goar Frishman, Mikhail S. Gelfand, Dmitrij Frishman: Mining sequence annotation databanks for association patterns. Bioinformatics 21(S3): 57 (2005)

A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov: Alternative splicing and protein function. BMC Bioinformatics 6: 266 (2005)

M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman: The PEDANT genome database in 2005. Nucleic Acids Research 33(Database-Issue): 308-310 (2005)

Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gelfand, Dmitrij Frishman: No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. BMC Bioinformatics 5: 41 (2004)

Hans-Werner Mewes, C. Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp: MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Research 32(Database-Issue): 41-44 (2004)

Matthias Heinig, Dmitrij Frishman: STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Research 32(Web-Server-Issue): 500-502 (2004)

Philip Wong, Grigory Kolesov, Dmitrij Frishman, Walid A. Houry: Phylogenetic Web Profiler. Bioinformatics 19(6): 782-783 (2003)

Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes: The PEDANT genome database. Nucleic Acids Research 31(1): 207-211 (2003)

Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman: Conservation of protein-protein interactions among Ascomycota species. German Conference on Bioinformatics 2003: 111-115

Grigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman: SNAPper: gene order predicts gene function. Bioinformatics 18(7): 1017-1019 (2002)

Hans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 30(1): 31-34 (2002)

Dmitrij Frishman, Kaj Albermann, Jean Hani, Klaus Heumann, Agnes Metanomski, Alfred Zollner, Hans-Werner Mewes: Functional and structural genomics using PEDANT. Bioinformatics 17(1): 44-57 (2001)

Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 28(1): 37-40 (2000)

Hans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman: MIPS: a database for genomes and protein sequences. Nucleic Acids Research 27(1): 44-48 (1999)

Dmitrij Frishman, Klaus Heumann, A. Lesk, Hans-Werner Mewes: Comprehensive, comprehensible, distributed and intelligent databases: current status. Bioinformatics 14(7): 551-561 (1998)

Hans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman: MIPS: a database for protein sequences and complete genomes. Nucleic Acids Research 26(1): 33-37 (1998)

Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand: Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics 1998

Kaj Albermann, M. Bähr, Dmitrij Frishman, A. Gleißner, Jean Hani, Klaus Heumann, A. Maierl, Alfred Zollner, Hans-Werner Mewes: The MIPS Yeast Genome Database. German Conference on Bioinformatics 1997: 121-122

Andreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes: Visualization and Analysis of the Complete Yeast Genome. German Conference on Bioinformatics - Selected Papers 1996: 178-188