Olivier Gascuel

François Chevenet, Matthieu Jung, Martine Peeters, Tulio de Oliveira, Olivier Gascuel: Searching for virus phylotypes. Bioinformatics 29(5): 561-570 (2013)

Nicolas Terrapon, Olivier Gascuel, Eric Maréchal, Laurent Bréhélin: Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum. BMC Bioinformatics 13: 67 (2012)

Amel Ghouila, Olivier Gascuel, Sadok Ben Yahia, Laurent Bréhélin: Enhancing Protein Domain Detection Using Domain Co-occurrence and Domain Exclusion. DEXA Workshops 2012: 223-228

Cuong Cao Dang, Vincent Lefort, Le Sy Vinh, Si Quang Le, Olivier Gascuel: ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices. Bioinformatics 27(19): 2758-2760 (2011)

Nicolas Terrapon, Olivier Gascuel, Eric Maréchal, Laurent Bréhélin: Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. Bioinformatics 25(23): 3077-3083 (2009)

Magnus Bordewich, Olivier Gascuel, Katharina T. Huber, Vincent Moulton: Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 110-117 (2009)

Laurent Bréhélin, Olivier Gascuel, Olivier Martin: Using repeated measurements to validate hierarchical gene clusters. Bioinformatics 24(5): 682-688 (2008)

Si Quang Le, Olivier Gascuel, Nicolas Lartillot: Empirical profile mixture models for phylogenetic reconstruction. Bioinformatics 24(20): 2317-2323 (2008)

Laurent Bréhélin, Jean-François Dufayard, Olivier Gascuel: PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. BMC Bioinformatics 9 (2008)

Alexis Criscuolo, Olivier Gascuel: Fast NJ-like algorithms to deal with incomplete distance matrices. BMC Bioinformatics 9 (2008)

Alexis Dereeper, V. Guignon, G. Blanc, Stéphane Audic, S. Buffet, François Chevenet, Jean-François Dufayard, S. Guindon, Vincent Lefort, M. Lescot, Jean-Michel Claverie, Olivier Gascuel: Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 36(Web-Server-Issue): 465-469 (2008)

Richard Desper, Olivier Gascuel: Distance-Based Phylogeny Reconstruction (Optimal Radius). Encyclopedia of Algorithms 2008

Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Olivier Gascuel: Duplication and Inversion History of a Tandemly Repeated Genes Family. Journal of Computational Biology 14(4): 462-478 (2007)

Elodie Duprat, Marie-Paule Lefranc, Olivier Gascuel: A simple method to predict protein-binding from aligned sequences - application to MHC superfamily and ß2-microglobulin. Bioinformatics 22(4): 453-459 (2006)

Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel: Evolution of Tandemly Repeated Sequences Through Duplication and Inversion. Comparative Genomics 2006: 129-140

Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden: Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs. Bioinformatics 21(17): 3490-3500 (2005)

Wim Hordijk, Olivier Gascuel: Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood. Bioinformatics 21(24): 4338-4347 (2005)

Olivier Elemento, Olivier Gascuel: An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees. J. Discrete Algorithms 3(2-4): 362-374 (2005)

Stéphane Guindon, Franck Lethiec, Patrice Duroux, Olivier Gascuel: PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Research 33(Web-Server-Issue): 557-559 (2005)

Denis Bertrand, Olivier Gascuel: Topological Rearrangements and Local Search Method for Tandem Duplication Trees. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 15-28 (2005)

Olivier Gascuel, Andy McKenzie: Performance Analysis of Hierarchical Clustering Algorithms. J. Classification 21(1): 3-18 (2004)

Denis Bertrand, Olivier Gascuel: Topological Rearrangements and Local Search Method for Tandem Duplication Trees. WABI 2004: 374-387

François Denis, Olivier Gascuel: On the consistency of the minimum evolution principle of phylogenetic inference. Discrete Applied Mathematics 127(1): 63-77 (2003)

Christophe Fagot, Olivier Gascuel, Patrick Girard, Christian Landrault: A Ring Architecture Strategy for BIST Test Pattern Generation. J. Electronic Testing 19(3): 223-231 (2003)

Olivier Elemento, Olivier Gascuel: An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees. CPM 2003: 96-108

Richard Desper, Olivier Gascuel: Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. Journal of Computational Biology 9(5): 687-705 (2002)

Olivier Elemento, Olivier Gascuel: An efficient and accurate distance based algorithm to reconstruct tandem duplication trees. ECCB 2002: 92-99

Richard Desper, Olivier Gascuel: Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. WABI 2002: 357-374

Laurent Bréhélin, Olivier Gascuel, Gilles Caraux: Hidden Markov Models with Patterns to Learn Boolean Vector Sequences and Application to the Built-In Self-Test for Integrated Circuits. IEEE Trans. Pattern Anal. Mach. Intell. 23(9): 997-1008 (2001)

Olivier Gascuel, Marie-France Sagot (Eds.): Computational Biology, First International Conference on Biology, Informatics, and Mathematics, JOBIM 2000, Montpellier, France, May 3-5, 2000, Selected Papers. Lecture Notes in Computer Science 2066, Springer 2001, isbn 3-540-42242-0

Olivier Gascuel, Bernard M. E. Moret (Eds.): Algorithms in Bioinformatics, First International Workshop, WABI 2001, Aarhus, Denmark, August 28-31, 2001, Proceedings. Lecture Notes in Computer Science 2149, Springer 2001, isbn 3-540-42516-0

Olivier Gascuel: Data Model and Classification by Trees: The Minimum Variance Reduction (MVR) Method. J. Classification 17(1): 67-99 (2000)

Vincent Berry, Olivier Gascuel: Inferring evolutionary trees with strong combinatorial evidence. Theor. Comput. Sci. 240(2): 271-298 (2000)

Laurent Bréhélin, Olivier Gascuel, Gilles Caraux: Hidden Markov Models with Patterns and Their Application to Integrated Circuit Testing. ECML 2000: 75-87

Vincent Ranwez, Olivier Gascuel: Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees. JOBIM 2000: 84-98

Laurent Bréhélin, Olivier Gascuel, Gilles Caraux, Patrick Girard, Christian Landrault: Hidden Markov and Independence Models with Patterns for Sequential BIST. VTS 2000: 359-368

Olivier Gascuel, Bernadette Bouchon-Meunier, Gilles Caraux, Patrick Gallinari, Alain Guénoche, Yann Guermeur, Yves Lechevallier, Christophe Marsala, Laurent Miclet, Jacques Nicolas, Richard Nock, Mohammed Ramdani, Michèle Sebag, Basavanneppa Tallur, Gilles Venturini, Patrick Vitte: Twelve Numerical, Symbolic and Hybrid Supervised Classification Methods. IJPRAI 12(4): 517-571 (1998)

Christophe Fagot, Olivier Gascuel, Patrick Girard, Christian Landrault: A Ring Architecture Strategy for BIST Test Pattern Generation. Asian Test Symposium 1998: 418-423

Vincent Berry, Olivier Gascuel: Inferring Evolutionary Trees with Strong Combinatorial Evidence. COCOON 1997: 111-123

Pascal Jappy, Richard Nock, Olivier Gascuel: Negative Robust Learning Results from Horn Claus Programs. ICML 1996: 258-265

Richard Nock, Olivier Gascuel: On Learning Decision Committees. ICML 1995: 413-420

Pascal Jappy, Marie-Catherine Daniel-Vatonne, Olivier Gascuel, Colin de la Higuera: Learning from Recursive, Tree Structured Examples. ECML 1994: 367-370

Fernando de Carvalho Gomes, Olivier Gascuel: SDL, A Stochastic Algorithm for Learning Decision Lists with Limited Complexity. Ann. Math. Artif. Intell. 10(3): 281-302 (1993)

Olivier Gascuel, Gilles Caraux: Distribution-free performance bounds with the resubstitution error estimate. Pattern Recognition Letters 13(11): 757-764 (1992)

Olivier Gascuel, Gilles Caraux: Statistical Significance in Inductive Learning. ECAI 1992: 435-439

Olivier Gascuel, J. L. Golmard: A simple method for predicting the secondary structure of globular proteins: implications and accuracy. Computer Applications in the Biosciences 4(3): 357-365 (1988)

Olivier Gascuel, Antoine Danchin: Data Analysis Using a Learning Program, a Case Study: An Application of PLAGE to a Biological Sequence Analysis. ECAI 1988: 390-395