James C. Gee

Yuanjie Zheng, Stephen Lin, Sing Bing Kang, Rui Xiao, James C. Gee, Chandra Kambhamettu: Single-Image Vignetting Correction from Gradient Distribution Symmetries. IEEE Trans. Pattern Anal. Mach. Intell. 35(6): 1480-1494 (2013)

Nagesh Adluru, Hui Zhang, Andrew S. Fox, Steven E. Shelton, Chad M. Ennis, Anne M. Bartosic, Jonathan A. Oler, Do P. M. Tromp, Elizabeth Zakszewski, James C. Gee, Ned H. Kalin, Andrew L. Alexander: A diffusion tensor brain template for Rhesus Macaques. NeuroImage 59(1): 306-318 (2012)

Seung-Goo Kim, Brian B. Avants, Hyekyoung Lee, James C. Gee, Moo K. Chung, Richard J. Davidson, Jamie L. Hanson, Seth D. Pollak: Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. ISBI 2012: 42-45

Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich: Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297

Yuanjie Zheng, Brian Vanderbeek, Rui Xiao, Ebenezer Daniel, Dwight Stambolian, Maureen G. Maguire, Joan O'Brien, James C. Gee: Retrospective illumination correction of retinal fundus images from gradient distribution sparsity. ISBI 2012: 972-975

Paramveer S. Dhillon, Brian B. Avants, Lyle H. Ungar, James C. Gee: Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging. ISBI 2012: 1132-1135

Yan Wang, Brad M. Keller, Yuanjie Zheng, Raymond J. Acciavatti, James C. Gee, Andrew D. A. Maidment, Despina Kontos: A Phantom Study for Assessing the Effect of Different Digital Detectors on Mammographic Texture Features. Digital Mammography / IWDM 2012: 604-610

Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee: Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. MICCAI (3) 2012: 206-213

Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee: A Unified Image Registration Framework for ITK. WBIR 2012: 266-275

Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, James C. Gee: A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage 54(3): 2033-2044 (2011)

Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee: An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. Neuroinformatics 9(4): 381-400 (2011)

Nicholas J. Tustison, Brian B. Avants, Marcelo Siqueira, James C. Gee: Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation. IEEE Transactions on Image Processing 20(6): 1756-1761 (2011)

Caroline C. Brun, Natasha Lepore, Xavier Pennec, Yi-Yu Chou, Agatha D. Lee, Greig I. de Zubicaray, Katie McMahon, Margaret J. Wright, James C. Gee, Paul M. Thompson: A Nonconservative Lagrangian Framework for Statistical Fluid Registration - SAFIRA. IEEE Trans. Med. Imaging 30(2): 184-202 (2011)

Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee: Point Set Registration Using Havrda-Charvat-Tsallis Entropy Measures. IEEE Trans. Med. Imaging 30(2): 451-460 (2011)

Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim: Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Med. Imaging 30(11): 1901-1920 (2011)

Yuanjie Zheng, Allan A. Hunter, Jue Wu, Hongzhi Wang, Jianbin Gao, Maureen G. Maguire, James C. Gee: Landmark Matching Based Automatic Retinal Image Registration with Linear Programming and Self-similarities. IPMI 2011: 674-685

Yuanjie Zheng, Hongzhi Wang, Jue Wu, Jianbin Gao, James C. Gee: Multiscale analysis revisited: Detection of drusen and vessel in digital retinal images. ISBI 2011: 689-692

Seung-Goo Kim, Moo K. Chung, Jamie L. Hanson, Brian B. Avants, James C. Gee, Richard J. Davidson, Seth D. Pollak: Structural connectivity via the tensor-based morphometry. ISBI 2011: 808-811

Jue Wu, Kathryn Davis, Allan Azarion, Yuanjie Zheng, Hongzhi Wang, Brian Litt, James C. Gee: Brain Parcellation Aids in Electrode Localization in Epileptic Patients. AE-CAI 2011: 130-137

Brad M. Keller, Diane Nathan, Yan Wang, Yuanjie Zheng, James C. Gee, Emily F. Conant, Despina Kontos: Adaptive Multi-cluster Fuzzy C-Means Segmentation of Breast Parenchymal Tissue in Digital Mammography. MICCAI (3) 2011: 562-569

Sheng-Zheng Wang, Jie Yang, James C. Gee: Cranio-maxillofacial surgery simulation based on pre-specified target face configurations. Journal of Zhejiang University - Science C 11(7): 504-513 (2010)

Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich: A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features. Medical Image Analysis 14(5): 666-673 (2010)

Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee: The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010)

Brian B. Avants, Philip A. Cook, Lyle H. Ungar, James C. Gee, Murray Grossman: Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis. NeuroImage 50(3): 1004-1016 (2010)

Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey: Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010)

Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee: Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development. NeuroImage 53(2): 450-459 (2010)

Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee: N4ITK: Improved N3 Bias Correction. IEEE Trans. Med. Imaging 29(6): 1310-1320 (2010)

Yuanjie Zheng, James C. Gee: Estimation of image bias field with sparsity constraints. CVPR 2010: 255-262

Yuanjie Zheng, Andrew D. A. Maidment, James C. Gee: Accurate registration of dynamic contrast-enhanced breast MR images with robust estimation and linear programming. ISBI 2010: 536-539

Ramón Aranda, Mariano Rivera, Alonso Ramirez-Manzanares, Manzar Ashtari, James C. Gee: Massive Particles for Brain Tractography. MICAI (1) 2010: 446-457

Jeffrey T. Duda, Corey McMillan, Murray Grossman, James C. Gee: Relating Structural and Functional Connectivity to Performance in a Communication Task. MICCAI (2) 2010: 282-289

Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee: Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. MICCAI (1) 2010: 324-331

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi. WBIR 2010: 83-90

Despina Kontos, Vasileios Megalooikonomou, James C. Gee: Morphometric analysis of brain images with reduced number of statistical tests: A study on the gender-related differentiation of the corpus callosum. Artificial Intelligence in Medicine 47(1): 75-86 (2009)

Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre: A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009)

Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey: Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009)

Nicholas J. Tustison, Brian B. Avants, James C. Gee: Directly Manipulated Free-Form Deformation Image Registration. IEEE Transactions on Image Processing 18(3): 624-635 (2009)

Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee: A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration. IPMI 2009: 215-226

Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee: Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease. IPMI 2009: 552-563

Gang Song, Eduardo Barbosa Jr., Nicholas J. Tustison, James C. Gee, Warren B. Gefter, Maryl Kreider, Drew A. Torigian: Computational Analysis of HRCT Images for Characterization and Differentiation of ILD and COPD. ISBI 2009: 999-1002

Sheng-Zheng Wang, James C. Gee, Jie Yang: A Framework for Craniofacial Surgery Simulation Based on Pre-Specified Target Face Configurations. ISBI 2009: 1055-1058

Alonso Ramirez-Manzanares, Mariano Rivera, James C. Gee: Denoising Intra-voxel Axon Fiber Orientations by Means of ECQMMF Method. MICAI 2009: 303-312

Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich: A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. MICCAI (1) 2009: 141-149

Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee: Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences. MICCAI (1) 2009: 200-207

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. MICCAI (1) 2009: 466-473

Yuanjie Zheng, Murray Grossman, Suyash P. Awate, James C. Gee: Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images. MICCAI (1) 2009: 852-859

Marcelo Siqueira, Longin Jan Latecki, Nicholas J. Tustison, Jean H. Gallier, James C. Gee: Topological Repairing of 3D Digital Images. Journal of Mathematical Imaging and Vision 30(3): 249-274 (2008)

Brian B. Avants, Charles L. Epstein, Murray Grossman, James C. Gee: Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis 12(1): 26-41 (2008)

Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee: Structure-specific statistical mapping of white matter tracts. NeuroImage 41(2): 448-461 (2008)

Zhuang Song, Suyash P. Awate, James C. Gee: Nonparametric Markov priors for tissue segmentation. ISBI 2008: 73-76

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee: Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164

Suyash P. Awate, Hui Zhang, Tony J. Simon, James C. Gee: Multivariate segmentation of brain tissues by fusion of MRI and DTI data. ISBI 2008: 213-216

Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich: Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619

Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee: Surface-based modeling of white matter fasciculi with orientation encoding. ISBI 2008: 708-711

Nicholas J. Tustison, Suyash P. Awate, Talissa A. Altes, James C. Gee, Jing Cai, G. Wilson Miller, Eduard E. de Lange, John P. Mugler III: Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework. ISBI 2008: 772-775

Philip A. Cook, Hui Zhang, Suyash P. Awate, James C. Gee: Atlas-guided probabilistic diffusion-tensor fiber tractography. ISBI 2008: 951-954

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich: Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488

Alonso Ramirez-Manzanares, Philip A. Cook, James C. Gee: A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans. MICCAI (1) 2008: 305-312

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee: Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517

Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee: 3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. MICCAI (1) 2008: 559-567

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich: Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773

Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed Lein, Allan Jones, Michael Hawrylycz: Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE/ACM Trans. Comput. Biology Bioinform. 4(3): 382-393 (2007)

James C. Gee, Paul M. Thompson: Guest editorial: Special Issue on Computational Neuroanatomy. IEEE Trans. Med. Imaging 26(4): 425-426 (2007)

Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee: Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Trans. Med. Imaging 26(9): 1166-1178 (2007)

Suyash P. Awate, Hui Zhang, James C. Gee: A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis: With Applications to DTI-Tract Extraction. IEEE Trans. Med. Imaging 26(11): 1525-1536 (2007)

Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee: High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Med. Imaging 26(11): 1585-1597 (2007)

Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee: Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. ICCV 2007: 1-8

Gang Song, Brian B. Avants, James C. Gee: Multi-start Method with Prior Learning for Image Registration. ICCV 2007: 1-8

Nicholas J. Tustison, Brian B. Avants, James C. Gee: Improved FFD B-Spline Image Registration. ICCV 2007: 1-8

Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee: Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. ICCV 2007: 1-8

Suyash P. Awate, James C. Gee: A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis. IPMI 2007: 296-307

Nicholas J. Tustison, Talissa A. Altes, James C. Gee, Jing Cai, Eduard E. de Lange, John P. Mugler III: Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging. ISBI 2007: 368-371

Paul A. Yushkevich, John A. Detre, James C. Gee: Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis. ISBI 2007: 420-423

Brian B. Avants, Charles L. Epstein, James C. Gee: Symmetric Shape Averaging in the Diffeomorphic Space. ISBI 2007: 636-639

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. MICCAI (2) 2007: 211-218

Suyash P. Awate, Hui Zhang, James C. Gee: Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction. MICCAI (1) 2007: 294-301

Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee: Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia. MICCAI (2) 2007: 303-310

Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee: Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. MICCAI (1) 2007: 359-366

Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee: Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. MICCAI (2) 2007: 777-784

Tessa Sundaram Cook, Nicholas J. Tustison, Jürgen Biederer, Ralf Tetzlaff, James C. Gee: How Do Registration Parameters Affect Quantitation of Lung Kinematics? MICCAI (1) 2007: 817-824

Zhuang Song, Suyash P. Awate, Daniel J. Licht, James C. Gee: Clinical Neonatal Brain MRI Segmentation Using Adaptive Nonparametric Data Models and Intensity-Based Markov Priors. MICCAI (1) 2007: 883-890

Sumiaki Matsumoto, Harold L. Kundel, James C. Gee, Warren B. Gefter, Hiroto Hatabu: Pulmonary nodule detection in CT images with quantized convergence index filter. Medical Image Analysis 10(3): 343-352 (2006)

J. B. Antoine Maintz, James C. Gee: Editorial. Medical Image Analysis 10(3): 396 (2006)

Brian B. Avants, P. Thomas Schoenemann, James C. Gee: Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex. Medical Image Analysis 10(3): 397-412 (2006)

Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Analysis 10(5): 764-785 (2006)

Paul A. Yushkevich, Hui Zhang, James C. Gee: Continuous Medial Representation for Anatomical Structures. IEEE Trans. Med. Imaging 25(12): 1547-1564 (2006)

Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee: Adaptive graph cuts with tissue priors for brain MRI segmentation. ISBI 2006: 762-765

Brian B. Avants, Charles L. Epstein, James C. Gee: Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms. MIAR 2006: 9-16

Nicholas J. Tustison, James C. Gee: Generalized n-D C^k B-Spline Scattered Data Approximation with Confidence Values. MIAR 2006: 76-83

Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee: Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. MICCAI (2) 2006: 284-291

Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee: Integrated Graph Cuts for Brain MRI Segmentation. MICCAI (2) 2006: 831-838

Brian B. Avants, Murray Grossman, James C. Gee: Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe. WBIR 2006: 50-57

Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee: 3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237

Nicholas J. Tustison, Brian B. Avants, Tessa A. Sundaram, Jeffrey T. Duda, James C. Gee: A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework. WBIR 2006: 238-246

Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee: Constrained quadrilateral meshes of bounded size. Int. J. Comput. Geometry Appl. 15(1): 55-98 (2005)

Tessa A. Sundaram, James C. Gee: Towards a model of lung biomechanics: pulmonary kinematics via registration of serial lung images. Medical Image Analysis 9(6): 524-537 (2005)

Despina Kontos, Vasileios Megalooikonomou, James C. Gee: Reducing the Computational Cost for Statistical Medical Image Analysis: An MRI Study on the Sexual Morphological Differentiation of the Corpus Callosum. CBMS 2005: 282-287

Paul A. Yushkevich, Hui Zhang, James C. Gee: Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions. IPMI 2005: 162-173

Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, O. Ciccarelli, A. J. Thompson: An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171

Hui Zhang, Paul A. Yushkevich, James C. Gee: Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. MICCAI 2005: 172-179

Tessa A. Sundaram, Brian B. Avants, James C. Gee: Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data. MICCAI (2) 2005: 328-335

Paul A. Yushkevich, Hui Zhang, James C. Gee: Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. MICCAI (2) 2005: 725-732

Brian B. Avants, Charles L. Epstein, James C. Gee: Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images. VLSM 2005: 247-258

Alexei Manso Correa Machado, James C. Gee, Mario Fernando Montenegro Campos: Structural shape characterization via exploratory factor analysis. Artificial Intelligence in Medicine 30(2): 97-118 (2004)

Mariano Rivera, James C. Gee: Two--level MRF Models for Image Restoration and Segmentation. BMVC 2004: 1-10

Hui Zhang, Paul A. Yushkevich, James C. Gee: Registration of Diffusion Tensor Images. CVPR (1) 2004: 842-847

Brian B. Avants, James C. Gee: Symmetric Geodesic Shape Averaging and Shape Interpolation. ECCV Workshops CVAMIA and MMBIA 2004: 99-110

Hui Zhang, Paul A. Yushkevich, James C. Gee: Towards Diffusion Profile Image Registration. ISBI 2004: 324-327

Brian B. Avants, James C. Gee: Shape Averaging with Diffeomorphic Flows for Atlas Creation. ISBI 2004: 595-598

Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee: Regional Structural Characterization of the Brain of Schizophrenia Patients. MICCAI (2) 2004: 688-695

Tessa A. Sundaram, Brian B. Avants, James C. Gee: A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images. MICCAI (2) 2004: 1000-1007

Peter Rogelj, Stanislav Kovacic, James C. Gee: Point similarity measures for non-rigid registration of multi-modal data. Computer Vision and Image Understanding 92(1): 112-140 (2003)

James C. Gee, Mostafa Analoui: Guest Editorial: Special Section on Model-based Medical Image Processing and Analysis. J. Electronic Imaging 12(1): 6 (2003)

Alexei Manso Correa Machado, Mario Fernando Montenegro Campos, James C. Gee: Bayesian model for intensity mapping in magnetic resonance image registration. J. Electronic Imaging 12(1): 31-39 (2003)

Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee: A New Algorithm for Generating Quadrilateral Meshes and its Application to FE-Based Image Registration. IMR 2003: 159-170

Brian B. Avants, James C. Gee: The Shape Operator for Differential Analysis of Images. IPMI 2003: 101-113

Abraham Dubb, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee: Characterization of Brain Plasticity in Schizophrenia Using Template Deformation. MICCAI (2) 2003: 457-463

Brian B. Avants, James C. Gee: Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection. Scale-Space 2003: 798-813

Brian B. Avants, James C. Gee: Formulation and Evaluation of Variational Curve Matching with Prior Constraints. WBIR 2003: 21-30

James C. Gee, J. B. Antoine Maintz, Michael W. Vannier (Eds.): Biomedical Image Registration, Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers. Lecture Notes in Computer Science 2717, Springer 2003, isbn 3-540-20343-5

Mariano Rivera, James C. Gee: Image Segmentation by Flexible Models Based on Robust Regularized Networks. ECCV (3) 2002: 621-634

Brian B. Avants, James C. Gee: Robust rotations between anatomical curves. ISBI 2002: 337-340

Luis Ibáñez, Lydia Ng, James C. Gee, Stephen R. Aylward: Registration patterns: the generic framework for image registration of the insight toolkit. ISBI 2002: 345-348

James C. Gee, Daniel C. Alexander, Mariano Rivera, Jeffrey T. Duda: Non-rigid registration of diffusion tensor MR images. ISBI 2002: 477-480

Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee: Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. MICCAI (2) 2002: 381-388

Aljaz Noe, James C. Gee: Efficient Partial Volume Tissue Classification in MRI Scans. MICCAI (1) 2002: 698-705

James C. Gee, Tessa A. Sundaram, Ichiro Hasegawa, Hidemasa Uematsu, Hiroto Hatabu: Characterization of Regional Pulmonary Mechanics from Serial MRI Data. MICCAI (1) 2002: 762-769

Michael P. Lin, Christian Devita, James C. Gee, Murray Grossman: Using Voxel-Based Morphometry to Examine Atrophy-Behavior Correlates in Alzheimer's Disease and Frontotemporal Dementia. MICCAI (1) 2002: 770-776

Alexei Manso Correa Machado, James C. Gee, Mario Fernando Montenegro Campos: Substructural Segmentation Based on Regional Shape Differences. SIBGRAPI 2002: 3-10

Daniel C. Alexander, Carlo Pierpaoli, Peter J. Basser, James C. Gee: Spatial Transformations of Diffusion Tensor Magnetic Resonance Images. IEEE Trans. Med. Imaging 20(11): 1131-1139 (2001)

David J. Pettey, James C. Gee: Using a Linear Diagnostic Function and Non-rigid Registration to Search for Morphological Differences Between Populations: An Example Involving the Male and Female Corpus Callosum. IPMI 2001: 372-379

Aljaz Noe, James C. Gee: Partial Volume Segmentation of Cerebral MRI Scans with Mixture Model Clustering. IPMI 2001: 423-430

Brian B. Avants, Marcelo Siqueira, James C. Gee: Computing Match Functions for Curves in R² and R³ by Refining Polyline Approximations. MICCAI 2001: 1178-1179

Daniel C. Alexander, James C. Gee: Elastic Matching of Diffusion Tensor Images. Computer Vision and Image Understanding 77(2): 233-250 (2000)

Alexei Manso Correa Machado, Mario Fernando Montenegro Campos, James C. Gee: Probabilistic Intensity Mapping in MRI Image Registration. SIBGRAPI 2000: 74-81

James C. Gee: On matching brain volumes. Pattern Recognition 32(1): 99-111 (1999)

Daniel C. Alexander, James C. Gee, Ruzena Bajcsy: Similarity Measures for Matching Diffusion Tensor Images. BMVC 1999: 1-10

Daniel C. Alexander, James C. Gee, Ruzena Bajcsy: Elastic Matching of Diffusion Tensor MRIs. CVPR 1999: 1244-1249

Alexei Manso Correa Machado, Mario Fernando Montenegro Campos, James C. Gee: Method for Estimating the Intensity Mapping between MRI Images. IPMI 1999: 496-501

Alexei Manso Correa Machado, James C. Gee, Mario Fernando Montenegro Campos: Exploratory Factor Analysis in Morphometry. MICCAI 1999: 378-385

Daniel C. Alexander, James C. Gee, Ruzena Bajcsy: Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images. MICCAI 1999: 463-472

James C. Gee, David R. Haynor, Lionel Le Briquer, Ruzena Bajcsy: Advances in elastic matching theory and its implementation. CVRMed 1997: 63-72

Lionel Le Briquer, James C. Gee: Design of a Statistical Model of Brain Shape. IPMI 1997: 477-482

James C. Gee, Woodrow Barfield, David R. Haynor, Yongmin Kim: User Interface Design for Medical Imaging Workstations: Image Display and Processing. Interacting with Computers 5(3): 279-294 (1993)