Pier Federico Gherardini

Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich, Gabriele Ausiello: Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities. BMC Bioinformatics 13(S-4): S17 (2012)

Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via: Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Research 39(Database-Issue): 268-271 (2011)

Luca Parca, Iolanda Mangone, Pier Federico Gherardini, Gabriele Ausiello, Manuela Helmer-Citterich: Phosfinder: a web server for the identification of phosphate-binding sites on protein structures. Nucleic Acids Research 39(Web-Server-Issue): 278-282 (2011)

Gabriele Ausiello, Pier Federico Gherardini, Elena Gatti, Ottaviano Incani, Manuela Helmer-Citterich: Structural motifs recurring in different folds recognize the same ligand fragments. BMC Bioinformatics 10 (2009)

Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich: FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinformatics 9(S-2) (2008)

Allegra Via, Pier Federico Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich: False occurrences of functional motifs in protein sequences highlight evolutionary constraints. BMC Bioinformatics 8 (2007)

Andreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich: Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. Nucleic Acids Research 35(Database-Issue): 229-231 (2007)

Allegra Via, Daniele Peluso, Pier Federico Gherardini, Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela Helmer-Citterich: 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. Nucleic Acids Research 35(Web-Server-Issue): 416-419 (2007)