Toby J. Gibson

Robert J. Weatheritt, Katja Luck, E. Petsalaki, Norman E. Davey, Toby J. Gibson: The identification of short linear motif-mediated interfaces within the human interactome. Bioinformatics 28(7): 976-982 (2012)

Holger Dinkel, Sushama Michael, Robert J. Weatheritt, Norman E. Davey, Kim Van Roey, Brigitte Altenberg, Grischa Toedt, Bora Uyar, Markus Seiler, Aidan Budd, Lisa Jödicke, Marcel A. Dammert, Christian Schroeter, Maria Hammer, Tobias Schmidt, Peter Jehl, Caroline McGuigan, Magdalena Dymecka, Claudia Chica, Katja Luck, Allegra Via, Andrew Chatr-aryamontri, Niall Haslam, Gleb Grebnev, Richard J. Edwards, Michel O. Steinmetz, Heike Meiselbach, Francesca Diella, Toby J. Gibson: ELM - the database of eukaryotic linear motifs. Nucleic Acids Research 40(Database-Issue): 242-251 (2012)

Robert J. Weatheritt, Peter Jehl, Holger Dinkel, Toby J. Gibson: iELM - a web server to explore short linear motif-mediated interactions. Nucleic Acids Research 40(Web-Server-Issue): 364-369 (2012)

Holger Dinkel, Claudia Chica, Allegra Via, Cathryn M. Gould, Lars Juhl Jensen, Toby J. Gibson, Francesca Diella: Phospho.ELM: a database of phosphorylation sites - update 2011. Nucleic Acids Research 39(Database-Issue): 261-267 (2011)

Cathryn M. Gould, Francesca Diella, Allegra Via, Pål Puntervoll, Christine Gemünd, Sophie Chabanis-Davidson, Sushama Michael, Ahmed Sayadi, Jan Christian Bryne, Claudia Chica, Markus Seiler, Norman E. Davey, Niall J. Haslam, Robert J. Weatheritt, Aidan Budd, Tim Hughes, Jakub Pas, Leszek Rychlewski, Gilles Travé, Rein Aasland, Manuela Helmer-Citterich, Rune Linding, Toby J. Gibson: ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research 38(Database-Issue): 167-180 (2010)

Francesca Diella, Sophie Chabanis-Davidson, Katja Luck, Claudia Chica, Chenna Ramu, Claus Nerlov, Toby J. Gibson: KEPE - a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors. Bioinformatics 25(1): 1-5 (2009)

Allegra Via, Cathryn M. Gould, Christine Gemünd, Toby J. Gibson, Manuela Helmer-Citterich: A structure filter for the Eukaryotic Linear Motif Resource. BMC Bioinformatics 10: 351 (2009)

Sushama Michael, Gilles Travé, Chenna Ramu, Claudia Chica, Toby J. Gibson: Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment combined with native disorder prediction and motif conservation. Bioinformatics 24(4): 453-457 (2008)

Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo Lopez, Toby J. Gibson: A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. BMC Bioinformatics 9 (2008)

Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson: A new protein linear motif benchmark for multiple sequence alignment software. BMC Bioinformatics 9 (2008)

Francesca Diella, Cathryn M. Gould, Claudia Chica, Allegra Via, Toby J. Gibson: Phospho.ELM: a database of phosphorylation sites - update 2008. Nucleic Acids Research 36(Database-Issue): 240-244 (2008)

M. A. Larkin, Gordon Blackshields, N. P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins: Clustal W and Clustal X version 2.0. Bioinformatics 23(21): 2947-2948 (2007)

Francesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Küster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J. Gibson: Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics 5: 79 (2004)

Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson: Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research 31(13): 3497-3500 (2003)

Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson: ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research 31(13): 3625-3630 (2003)

Rune Linding, Robert B. Russell, Victor Neduva, Toby J. Gibson: GlobPlot: exploring protein sequences for globularity and disorder. Nucleic Acids Research 31(13): 3701-3708 (2003)

Konstantinos Bimpikis, Aidan Budd, Rune Linding, Toby J. Gibson: BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. Nucleic Acids Research 31(13): 3792-3794 (2003)

Chenna Ramu, Christine Gemünd, Toby J. Gibson: Object-oriented parsing of biological databases with Python. Bioinformatics 16(7): 628-638 (2000)

Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson: Improved sensitivity of profile searches through the use of sequence weights and gap excision. Computer Applications in the Biosciences 10(1): 19-29 (1994)

Toby J. Gibson, Julie Dawn Thompson: Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicases. Nucleic Acids Research 22(13): 2552-2556 (1994)