Ernst Dieter Gilles

Michael Ederer, Ernst Dieter Gilles, Oliver Sawodny: The Glansdorff-Prigogine stability criterion for biochemical reaction networks. Automatica 47(6): 1097-1104 (2011)

Sebastian Mirschel, Katrin Steinmetz, Michael Rempel, Martin Ginkel, Ernst Dieter Gilles: PROMOT: modular modeling for systems biology. Bioinformatics 25(5): 687-689 (2009)

Ronny Feuer, Michael Ederer, Ernst Dieter Gilles, Georg A. Sprenger, Oliver Sawodny, Thomas Sauter: Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante (Analysis of the Evolutive Adaptation of a Pyruvate-auxotrophic Escherichia coli Mutant). Automatisierungstechnik 56(5): 257-268 (2008)

Andreas Kremling, Katja Bettenbrock, Ernst Dieter Gilles: A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake. Bioinformatics 24(5): 704-710 (2008)

Julio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles: Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. ECCB 2008: 213-219

Markus Koschorreck, Holger Conzelmann, Sybille Ebert, Michael Ederer, Ernst Dieter Gilles: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8 (2007)

Julio Saez-Rodriguez, Luca Simeoni, Jonathan A. Lindquist, Rebecca Hemenway, Ursula Bommhardt, Boerge Arndt, Utz-Uwe Haus, Robert Weismantel, Ernst Dieter Gilles, Steffen Klamt, Burkhart Schraven: A Logical Model Provides Insights into T Cell Receptor Signaling. PLoS Computational Biology 3(8) (2007)

Holger Conzelmann, Julio Saez-Rodriguez, Thomas Sauter, Boris N. Kholodenko, Ernst Dieter Gilles: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7: 34 (2006)

Steffen Klamt, Julio Saez-Rodriguez, Jonathan A. Lindquist, Luca Simeoni, Ernst Dieter Gilles: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7: 56 (2006)

Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst Dieter Gilles, Martin Ginkel: Visual setup of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7: 506 (2006)

Ernst Dieter Gilles: Signal transduction and regulation in bacteria. Computers & Chemical Engineering 30(10-12): 1687-1699 (2006)

Julio Saez-Rodriguez, Andreas Kremling, Ernst Dieter Gilles: Dissecting the puzzle of life: modularization of signal transduction networks. Computers & Chemical Engineering 29(3): 619-629 (2005)

Steffen Klamt, Ernst Dieter Gilles: Minimal cut sets in biochemical reaction networks. Bioinformatics 20(2): 226-234 (2004)

Michael Mangold, Martin Ginkel, Ernst Dieter Gilles: A model library for membrane reactors implemented in the process modelling tool P_ROM_oT. Computers & Chemical Engineering 28(3): 319-332 (2004)

Andreas Kremling, Steffen Klamt, Martin Ginkel, Ernst Dieter Gilles: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme (Workbench for Model Set Up, Simulation, and Analysis of Cellular Systems). it - Information Technology 46(1): 12-19 (2004)

Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 19(2): 261-269 (2003)

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19(4): 524-531 (2003)

Martin Ginkel, Andreas Kremling, Torsten Nutsch, R. Rehner, Ernst Dieter Gilles: Modular Modeling of Cellular Systems with ProMoT/Diva. Bioinformatics 19(9): 1169-1176 (2003)

Michael Ederer, Thomas Sauter, Eric Bullinger, Ernst Dieter Gilles, Frank Allgöwer: An Approach for Dividing Models of Biological Reaction Networks into Functional Units. Simulation 79(12): 703-716 (2003)

Jörn Beschnidt, Ernst Dieter Gilles: "Virtual Waterway" - eine Simulationsumgebung für die Erprobung von Navigationssystemen zur autonomen Führung von Binnenschiffen. AMS 2003: 117-128

Andreas Kremling, Katja Bettenbrock, Sophia Fischer, Martin Ginkel, Thomas Sauter, Ernst Dieter Gilles: Towards Whole Cell "in Silico" Models for Cellular Systems: Model Set-up and Model Validation. POSTA 2003: 95-102

Steffen Klamt, Ernst Dieter Gilles: FluxAnalyzer: A Graphical User Interface for Analyzing Structural Properties and Fluxes in Balanced Metabolic Networks. German Conference on Bioinformatics 2001: 194-197

R. Barthel, Jörn Beschnidt, Ernst Dieter Gilles, Thomas Gern: Konfliktanalyse auf Binnenwasserstraßen. AMS 1999: 56-65

Thomas Gern, U. Kabatek, Ernst Dieter Gilles: Objektverfolgung und Leitlinienplanung für ein autonomes Binnenschiff. AMS 1998: 110-121

Thomas Gern, M. Sielaff, Ernst Dieter Gilles, Paul Levi: Ein Multi-Sensor-System zur automatischen Flußkartengenerierung. AMS 1997: 48-59

Martin Sandler, Anja Wahl, Reinhard Zimmermann, M. Faul, U. Kabatek, Ernst Dieter Gilles: Autonomous guidance of ships on waterways. Robotics and Autonomous Systems 18(3): 327-335 (1996)

Martin Sandler, M. Faul, Ernst Dieter Gilles: Ein integriertes Navigationssystem zur Ortung und Führung von Flächenpeilschiffen auf Binnenwasserstraßen. AMS 1996: 292-301

G. Breuel, Ernst Dieter Gilles: Towards an Object-Oriented Framework for the Modeling of Integrated Metabolic Processes. German Conference on Bioinformatics - Selected Papers 1996: 88-98

G. Breuel, Ernst Dieter Gilles: Towards an Objeet-Oriented Framework for the Modeling of Bacterial Metabolism. German Conference on Bioinformatics 1996: 104-109

Ernst Dieter Gilles, H. Schuchmann: Der Transistorschalter im analogen Rechenkreis. Elektronische Rechenanlagen 8(4): 186-191 (1966)