Sam Griffiths-Jones

Antonio Marco, Sam Griffiths-Jones: Detection of microRNAs in color space. Bioinformatics 28(3): 318-323 (2012)

Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman: Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research 39(Database-Issue): 141-145 (2011)

Ana Kozomara, Sam Griffiths-Jones: miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Research 39(Database-Issue): 152-157 (2011)

Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman: Rfam: updates to the RNA families database. Nucleic Acids Research 37(Database-Issue): 136-140 (2009)

Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright: miRBase: tools for microRNA genomics. Nucleic Acids Research 36(Database-Issue): 154-158 (2008)

Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright: miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research 34(Database-Issue): 140-144 (2006)

Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)

Sam Griffiths-Jones: RALEE--RNA ALignment Editor in Emacs. Bioinformatics 21(2): 257-259 (2005)

Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman: Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33(Database-Issue): 121-124 (2005)

Sam Griffiths-Jones: The microRNA Registry. Nucleic Acids Research 32(Database-Issue): 109-111 (2004)

Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)

Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy: Rfam: an RNA family database. Nucleic Acids Research 31(1): 439-441 (2003)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings in Bioinformatics 3(3): 225-235 (2002)

Sam Griffiths-Jones, Alex Bateman: The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics 18(9): 1243-1249 (2002)

Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)