Ivo Grosse

Jan Grau, Jens Keilwagen, André Gohr, Ivan A. Paponov, Stefan Posch, Michael Seifert, Marc Strickert, Ivo Grosse: Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library. J. Bioinformatics and Computational Biology 11(1) (2013)

Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou: Functional microRNA targets in protein coding sequences. Bioinformatics 28(6): 771-776 (2012)

Michael Seifert, André Gohr, Marc Strickert, Ivo Grosse: Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana. PLoS Computational Biology 8(1) (2012)

Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse: Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models. Bioinformatics 27(12): 1645-1652 (2011)

Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert, Ivo Grosse: De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference. PLoS Computational Biology 7(2) (2011)

Jens Keilwagen, Jan Grau, Stefan Posch, Marc Strickert, Ivo Grosse: Unifying generative and discriminative learning principles. BMC Bioinformatics 11: 98 (2010)

Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse: Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis. BMC Bioinformatics 11: 149 (2010)

Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou: miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Research 38(Database-Issue): 137-141 (2010)

Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch: Predicting miRNA targets utilizing an Extended Profile HMM. GCB 2010: 81-91

Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse: Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. Bioinformatics 25(16): 2118-2125 (2009)

Michael Seifert, Ali Banaei, Jens Keilwagen, Michael Florian Mette, Andreas Houben, François Roudier, Vincent Colot, Ivo Grosse, Marc Strickert: Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models. BIOSIGNALS 2009: 3-11

Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler (Eds.): German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany. LNI 157, GI 2009, isbn 978-3-88579-251-2

Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse: Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data. German Conference on Bioinformatics 2008: 116-127

Stefan Posch, Jan Grau, André Gohr, Irad E. Ben-Gal, Alexander E. Kel, Ivo Grosse: Recognition of cis-Regulatory Elements with Vombat. J. Bioinformatics and Computational Biology 5(2b): 561-577 (2007)

Christian Kuenne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise: Using Data Warehouse Technology in Crop Plant Bioinformatics. J. Integrative Bioinformatics 4(1) (2007)

Jan Grau, Jens Keilwagen, Alexander E. Kel, Ivo Grosse, Stefan Posch: Supervised Posteriors for DNA-motif Classification. German Conference on Bioinformatics 2007: 123-134

Jan Grau, Jens Keilwagen, Ivo Grosse, Stefan Posch: On the relevance of model orders to discriminative learning of Markov models. LWA 2007: 61-66

Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse: Recognition of splice sites using maximum conditional likelihood. LWA 2007: 67-72

Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker: Meta-All: a system for managing metabolic pathway information. BMC Bioinformatics 7: 465 (2006)

Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Grosse: VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. Nucleic Acids Research 34(Web-Server-Issue): 529-533 (2006)

Sven Mielordt, Ivo Grosse, Jürgen Kleffe: Data Structures for Genome Annotation, Alternative Splicing, and Validation. DILS 2006: 114-123

Irad E. Ben-Gal, Ayala Shani, André Gohr, Jan Grau, S. Arviv, Armin Shmilovici, Stefan Posch, Ivo Grosse: Identification of transcription factor binding sites with variable-order Bayesian networks. Bioinformatics 21(11): 2657-2666 (2005)

C. Künne, Matthias Lange, T. Funke, H. Miehe, T. Thiel, Ivo Grosse, Uwe Scholz: CR-EST: a resource for crop ESTs. Nucleic Acids Research 33(Database-Issue): 619-621 (2005)

Wentian Li, Ivo Grosse: Comments on "linguistic features in eukaryotic genomes". Complexity 9(4): 10-11 (2004)

Wentian Li, Fengzhu Sun, Ivo Grosse: Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression. Journal of Computational Biology 11(2/3): 215-226 (2004)

Wentian Li, Ivo Grosse: Gene selection criterion for discriminant microarray data analysis based on extreme value distributions. RECOMB 2003: 217-223

Wentian Li, Pedro Bernaola-Galván, Fatameh Haghighi, Ivo Grosse: Applications of Recursive Segmentation to the Analysis of DNA Sequences. Computers & Chemistry 26(5): 491-510 (2002)

Patrick Hoffman, Georges G. Grinstein, Kenneth A. Marx, Ivo Grosse, Eugene Stanley: DNA visual and analytic data mining. IEEE Visualization 1997: 437-442