Amarnath Gupta

Arjun Satish, Ramesh Jain, Amarnath Gupta: Visualizing progressive discovery. ICMR 2013: 315-316

Vadim Astakhov, Anita Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman: Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. Procedia CS 9: 1595-1603 (2012)

Fahim T. Imam, Stephen D. Larson, Anita Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone: Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. FOIS 2012: 15-28

Ibrahim Burak Özyurt, Christopher Condit, Amarnath Gupta: Processing Semantic Keyword Queries for Scientific Literature. NLDB 2012: 378-384

Amarnath Gupta, Ramesh Jain: Managing Event Information: Modeling, Retrieval, and Applications. Synthesis Lectures on Data Management, Morgan & Claypool Publishers 2011

Amarnath Gupta, Christopher Condit, Xufei Qian: Corrigendum to "BioDB: An ontology-enhanced information system for heterogeneous biological information" [Data & Knowledge Engineering 69 (11) (2010) 1084-1102]. Data Knowl. Eng. 70(1): 165 (2011)

Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita Bandrowski, Maryann E. Martone: NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. ICBO 2011

Sergey Kozhenkov, Yulia Dubinina, Mayya Sedova, Amarnath Gupta, Julia V. Ponomarenko, Michael Baitaluk: BiologicalNetworks 2.0 - an integrative view of genome biology data. BMC Bioinformatics 11: 610 (2010)

Amarnath Gupta, Christopher Condit, Xufei Qian: BioDB: An ontology-enhanced information system for heterogeneous biological information. Data Knowl. Eng. 69(11): 1084-1102 (2010)

Simone Santini, Amarnath Gupta: "Disputatio" on the Use of Ontologies in Multimedia. ACM Multimedia 2010: 1723-1728

Arjun Satish, Ramesh Jain, Amarnath Gupta: Tolkien: An Event Based Storytelling System. PVLDB 2(2): 1630-1633 (2009)

Lynn Young, Samson W. Tu, Lakshika Tennakoon, David Vismer, Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Maryann E. Martone, Amar K. Das, Matthew J. McAuliffe: Ontology driven data integration for autism research. CBMS 2009: 1-7

Amarnath Gupta, Michael Baitaluk, Animesh Ray, Aditya Bagchi: Data Mining by Navigation - An Experience with Systems Biology. PReMI 2009: 158-164

Amarnath Gupta, Setareh Rafatirad, Mingyan Gao, Ramesh Jain: MEDIALIFE: from images to a life chronicle. SIGMOD Conference 2009: 1119-1122

Amarnath Gupta: Annotation. Encyclopedia of Database Systems 2009: 85

Amarnath Gupta: Biological Networks. Encyclopedia of Database Systems 2009: 220

Amarnath Gupta: Biological Sequences. Encyclopedia of Database Systems 2009: 223-224

Amarnath Gupta: Data Provenance. Encyclopedia of Database Systems 2009: 608

Amarnath Gupta: Data Types in Scientific Data Management. Encyclopedia of Database Systems 2009: 644-646

Amarnath Gupta: Database Use in Science Applications. Encyclopedia of Database Systems 2009: 748-750

Amarnath Gupta: Graph Data Management in Scientific Applications. Encyclopedia of Database Systems 2009: 1261-1263

Amarnath Gupta: Information Integration Techniques for Scientific Data. Encyclopedia of Database Systems 2009: 1496-1498

Amarnath Gupta: Multidimensional Data Formats. Encyclopedia of Database Systems 2009: 1776-1777

Amarnath Gupta: Query Evaluation Techniques for Multidimensional Data. Encyclopedia of Database Systems 2009: 2253-2254

Amarnath Gupta: Sampling Techniques for Statistical Databases. Encyclopedia of Database Systems 2009: 2467

Amarnath Gupta: Scientific Databases. Encyclopedia of Database Systems 2009: 2502-2506

Amarnath Gupta: Statistical Data Management. Encyclopedia of Database Systems 2009: 2782

Bin Liu, Amarnath Gupta, Ramesh Jain: MedSMan: a live multimedia stream querying system. Multimedia Tools Appl. 38(2): 209-232 (2008)

Daniel Gardner, Huda Akil, Giorgio A. Ascoli, Douglas M. Bowden, William J. Bug, Duncan E. Donohue, David H. Goldberg, Bernice Grafstein, Jeffrey S. Grethe, Amarnath Gupta, Maryam Halavi, David N. Kennedy, Luis N. Marenco, Maryann E. Martone, Perry L. Miller, Hans-Michael Müller, Adrian Robert, Gordon M. Shepherd, Paul W. Sternberg, David C. Van Essen, Robert W. Williams: The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. Neuroinformatics 6(3): 149-160 (2008)

William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone: The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6(3): 175-194 (2008)

Amarnath Gupta, William J. Bug, Luis N. Marenco, Xufei Qian, Christopher Condit, Arun Rangarajan, Hans-Michael Müller, Perry L. Miller, Brian Sanders, Jeffrey S. Grethe, Vadim Astakhov, Gordon M. Shepherd, Paul W. Sternberg, Maryann E. Martone: Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). Neuroinformatics 6(3): 205-217 (2008)

Sandeep Gupta, Christopher Condit, Amarnath Gupta: Graphitti: An Annotation Management System for Heterogeneous Objects. ICDE 2008: 1568-1571

Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone: Toward an Ontological Database for Subcellular Neuroanatomy. ER Workshops 2007: 64-73

Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone: An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. OWLED 2007

Michael Baitaluk, Xufei Qian, Shubhada Godbole, Alpan Raval, Animesh Ray, Amarnath Gupta: PathSys: integrating molecular interaction graphs for systems biology. BMC Bioinformatics 7: 55 (2006)

Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarnath Gupta: BiologicalNetworks: visualization and analysis tool for systems biology. Nucleic Acids Research 34(Web-Server-Issue): 466-471 (2006)

Amarnath Gupta, Bertram Ludäscher, Louiqa Raschid: Report on the 2nd International Workshop on Data Integration in the Life Sciences: (DILS'05). SIGMOD Record 35(2): 56-58 (2006)

Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman: Semantically Based Data Integration Environment for Biomedical Research. CBMS 2006: 171-176

Amarnath Gupta, Simone Santini: On Querying OBO Ontologies Using a DAG Pattern Query Language. DILS 2006: 152-167

Bin Liu, Amarnath Gupta, Ramesh Jain: Using Temporal Semantics for Live Media Stream Queries. EDBT Workshops 2006: 465-482

Simone Santini, Amarnath Gupta: A Calculus and Algebra for Querying Directed Acyclic Graphs. JISBD 2006: 141-150

Li Chen, Maryann E. Martone, Amarnath Gupta, Lisa Fong, Mona Wong-Barnum: OntoQuest: Exploring Ontological Data Made Easy. VLDB 2006: 1183-1186

Bin Liu, Amarnath Gupta, Ramesh Jain: A live multimedia stream querying system. CVDB 2005: 35-42

John R. Smith, David S. Doermann, Amarnath Gupta, Jonathan Goldstein, Uri Shaft, Nalini K. Ratha: Multimedia applications: beyond similarity searches. CVDB 2005: 71-72

Vadim Astakhov, Amarnath Gupta, Simone Santini, Jeffrey S. Grethe: Data Integration in the Biomedical Informatics Research Network (BIRN). DILS 2005: 317-320

Li Chen, Amarnath Gupta, M. Erdem Kurul: Efficient Algorithms for Pattern Matching on Directed Acyclic Graphs. ICDE 2005: 384-385

Smriti Yamini, Amarnath Gupta: Spatiotemporal Annotation Graph (STAG): A Data Model for Composite Digital Objects. ICDE 2005: 1129-1130

Bin Liu, Amarnath Gupta, Ramesh Jain: MedSMan: a streaming data management system over live multimedia. ACM Multimedia 2005: 171-180

Yujun Wang, Simone Santini, Amarnath Gupta: Efficiently querying spatial histograms. Storage and Retrieval Methods and Applications for Multimedia 2005: 183-194

Judith Bayard Cushing, Kristin Vanderbilt, James Brunt, Amarnath Gupta, Matthew B. Jones, Peter McCartney: NSF Long Term Ecological Research Sites - Praxis et Theoria. SSDBM 2005: 303-306

Li Chen, Amarnath Gupta, M. Erdem Kurul: Stack-based Algorithms for Pattern Matching on DAGs. VLDB 2005: 493-504

Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta: Designing and executing scientific workflows with a programmable integrator. Bioinformatics 20(13): 2092-2100 (2004)

Amarnath Gupta: Life Science Research and Data Management. SIGMOD Record 33(2): 12-14 (2004)

Ilya Zaslavsky, Haiyun He, Joshua Tran, Maryann E. Martone, Amarnath Gupta: Integrating Brain Data Spatially: Spatial Data Infrastructure and Atlas Environment for Online Federation and Analysis of Brain Images. DEXA Workshops 2004: 389-393

Chaitan Baru, Amarnath Gupta, Ilya Zaslavsky, Yannis Papakonstantinou, Peter Joftis: I2T: Information Integration Testbed for Digital Government. DG.O 2004

Simone Santini, Amarnath Gupta: Modeling Functional Data Sources as Relations. ER 2004: 55-68

Amarnath Gupta, Bin Liu, Pilho Kim, Ramesh Jain: Using Stream Semantics for Continuous Queries in Media Stream Processors. ICDE 2004: 854

Simone Santini, Amarnath Gupta: Mediating imaging data in a distributed system. Storage and Retrieval Methods and Applications for Multimedia 2004: 365-376

Maryann E. Martone, Shenglan Zhang, Amarnath Gupta, Xufei Qian, Haiyun He, Diana L. Price, Mona Wong, Simone Santini, Mark H. Ellisman: The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1(4): 379-395 (2003)

Amarnath Gupta, Bertram Ludäscher, Jeffrey S. Grethe, Maryann E. Martone: Towards a formalization of disease-specific ontologies for neuroinformatics. Neural Networks 16(9): 1277-1292 (2003)

Amarnath Gupta, Bertram Ludäscher: The Many Faces of Process Interaction Graphs: A Data Management Perspective. OMICS 7(1): 105-108 (2003)

Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta: A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB 2003: 386-387

Tianqiu Wang, Simone Santini, Amarnath Gupta: An Interpolated Volume Model for Databases. ER 2003: 335-348

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: BIRN-M: A Semantic Mediator for Solving Real-World Neuroscience Problems. SIGMOD Conference 2003: 678

Shenglan Zhang, Xufei Qian, Amarnath Gupta, Maryann E. Martone: A Practical Approach for Microscopy Imaging Data Management (MIDM) in Neuroscience. SSDBM 2003: 237-240

Ilkay Altintas, Sangeeta Bhagwanani, David Buttler, Sandeep Chandra, Zhengang Cheng, Matthew Coleman, Terence Critchlow, Amarnath Gupta, Wei Han, Ling Liu, Bertram Ludäscher, Calton Pu, Reagan Moore, Arie Shoshani, Mladen A. Vouk: A Modeling and Execution Environment for Distributed Scientific Workflows. SSDBM 2003: 247-250

Bertram Ludäscher, Ilkay Altintas, Amarnath Gupta: Compiling Abstract Scientific Workflows into Web Service Workflows. SSDBM 2003: 251-254

Tianqiu Wang, Simone Santini, Amarnath Gupta: An Interpolated Volume Data Model. VLDB 2003: 1121-1124

Simone Santini, Amarnath Gupta: Principles of schema design for multimedia databases. IEEE Transactions on Multimedia 4(2): 248-259 (2002)

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone, Xufei Qian, Edward Ross, Joshua Tran, Ilya Zaslavsky: A System for Managing Alternate Models in Model-Based Mediation. BNCOD 2002: 54-57

Amarnath Gupta, Ashraf Memon, Joshua Tran, Rajiv P. Bharadwaja, Ilya Zaslavsky: Information Mediation Across Heterogeneous Government Spatial Data Sources. DG.O 2002

Xufei Qian, Bertram Ludäscher, Maryann E. Martone, Amarnath Gupta: Navigating Virtual Information Sources with Know-ME. EDBT 2002: 739-741

Bertram Ludäscher, Ilkay Altintas, Amarnath Gupta: Time to Leave the Trees: From Syntactic to Conceptual Querying of XML. EDBT Workshops 2002: 148-168

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: Registering Scientific Information Sources for Semantic Mediation. ER 2002: 182-198

Simone Santini, Amarnath Gupta: Conceptual Integration of Multiple Partial Geometric Models. ER 2002: 365-379

Pedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo: Modeling Shape and Topology of 3D Images of Biological Specimens. ICPR (1) 2002: 79-82

Amarnath Gupta, Bertram Ludäscher, Reagan Moore: Ontology services for curriculum development in NSDL. JCDL 2002: 219-220

Simone Santini, Amarnath Gupta: Extensible feature management engine for image retrieval. Storage and Retrieval for Media Databases 2002: 86-97

Simone Santini, Amarnath Gupta: GeMBASE: A Geometric Mediator for Brain Analysis with Surface Ensembles. VLDB 2002: 1075-1078

Gully Burns, Klaas E. Stephan, Bertram Ludäscher, Amarnath Gupta, Rolf Kötter: Towards a federated neuroscientific knowledge management system using brain atlases. Neurocomputing 38-40: 1633-1641 (2001)

Simone Santini, Amarnath Gupta, Ramesh Jain: Emergent Semantics through Interaction in Image Databases. IEEE Trans. Knowl. Data Eng. 13(3): 337-351 (2001)

Ilya Zaslavsky, Amarnath Gupta, Bertram Ludäscher, Shabbar Tambawala: Query Evaluation and Presentation Planning within a Spatial Mediator: Extending XML-based Mediation to Heterogeneous Sources of GIS and Imagery Data (Invited Address). DEXA Workshop 2001: 853-855

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: An Extensible Model-Based Mediatior System with Domain Maps. ICDE Demo Sessions 2001

Bertram Ludäscher, Amarnath Gupta, Maryann E. Martone: Model-Based Mediation with Domain Maps. ICDE 2001: 81-90

Simone Santini, Amarnath Gupta: A Wavelet Data Model For Image Databases. ICME 2001

Simone Santini, Amarnath Gupta: A Data Model for Querying Wavelet Features in Image Databases. Multimedia Information Systems 2001: 21-30

Reagan Moore, Chaitan Baru, Arcot Rajasekar, Bertram Ludäscher, Richard Marciano, Michael Wan, Wayne Schroeder, Amarnath Gupta: Collection-Based Persistent Digital Archives - Part 1. D-Lib Magazine 6(3) (2000)

Reagan Moore, Chaitan Baru, Arcot Rajasekar, Bertram Ludäscher, Richard Marciano, Michael Wan, Wayne Schroeder, Amarnath Gupta: Collection-Based Persistent Digital Archives - Part 2. D-Lib Magazine 6(4) (2000)

Arnold W. M. Smeulders, Marcel Worring, Simone Santini, Amarnath Gupta, Ramesh Jain: Content-Based Image Retrieval at the End of the Early Years. IEEE Trans. Pattern Anal. Mach. Intell. 22(12): 1349-1380 (2000)

Shailendra K. Bhonsle, Amarnath Gupta, Simone Santini, Ramesh Jain: Semiorder Database for Complex Activity Recognition in Multi-Sensory Environments. ICDE 2000: 689-690

Mohan M. Trivedi, Shailendra K. Bhonsle, Amarnath Gupta: Database Architecture for Autonomous Transportation Agents for On-Scene Networked Incident Management (ATON). ICPR 2000: 4664-4667

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: Knowledge-Based Integration of Neuroscience Data Sources. SSDBM 2000: 39-52

Amarnath Gupta, Simone Santini: Toward feature Algebras in Visual Databases: The Case for a Histogram Algebra. VDB 2000: 177-

Bertram Ludäscher, Amarnath Gupta, Maryann E. Martone: Model-Based Information Integration in a Neuroscience Mediator System. VLDB 2000: 639-642

Amarnath Gupta, Chaitanya K. Baru: An extensible information model for shared scientific data collections. Future Generation Comp. Syst. 16(1): 9-20 (1999)

Chaitanya K. Baru, Vincent Chu, Amarnath Gupta, Bertram Ludäscher, Richard Marciano, Yannis Papakonstantinou, Pavel Velikhov: XML-based Information Mediation for Digital Libraries. ACM DL 1999: 214-215

Simone Santini, Ramesh Jain, Amarnath Gupta: A User Interface for Emergent Sementics in Image Databases. DS-8 1999: 123-143

Bertram Ludäscher, Amarnath Gupta: Modeling Interactive Web Sources for Information Mediation. ER (Workshops) 1999: 225-238

Amarnath Gupta, Richard Marciano, Ilya Zaslavsky, Chaitanya K. Baru: Integrating GIS and Imagery Through XML-Based Information Mediation. Integrated Spatial Databases 1999: 211-234

Chaitanya K. Baru, Amarnath Gupta, Bertram Ludäscher, Richard Marciano, Yannis Papakonstantinou, Pavel Velikhov, Vincent Chu: XML-Based Information Mediation with MIX. SIGMOD Conference 1999: 597-599

Shailendra K. Bhonsle, Amarnath Gupta, Simone Santini, Marcel Worring, Ramesh Jain: Complex Visual Activity Recognition Using a Temporally Ordered Database. VISUAL 1999: 719-726

Amarnath Gupta, Ramesh Jain: Visual Information Retrieval. Commun. ACM 40(5): 70-79 (1997)

Amarnath Gupta, Simone Santini, Ramesh Jain: In Search of Information in Visual Media. Commun. ACM 40(12): 34-42 (1997)

Arun Hampapur, Amarnath Gupta, Bradley Horowitz, Chiao-Fe Shu, Charles Fuller, Jeffrey R. Bach, Monika Gorkani, Ramesh Jain: Virage Video Engine. Storage and Retrieval for Image and Video Databases (SPIE) 1997: 188-198

Arun Katkere, Jennifer Schlenzig, Amarnath Gupta, Ramesh Jain: Interactive Video on WWW: Beyond VCR-Like Interfaces. Computer Networks 28(7-11): 1559-1572 (1996)

Amarnath Gupta, Bhabatosh Chanda: A hue preserving enhancement scheme for a class of colour images. Pattern Recognition Letters 17(2): 109-114 (1996)

Amarnath Gupta, Saied Moezzi, Adam L. Taylor, Shankar Chatterjee, Ramesh Jain, Michael H. Goldbaum, S. Burgess: Content-based retrieval of ophthalmological images. ICIP (3) 1996: 703-706

Jeffrey R. Bach, Charles Fuller, Amarnath Gupta, Arun Hampapur, Bradley Horowitz, Rich Humphrey, Ramesh Jain, Chiao-Fe Shu: Virage Image Search Engine: An Open Framework for Image Management. Storage and Retrieval for Image and Video Databases (SPIE) 1996: 76-87

Patrick H. Kelly, Amarnath Gupta, Ramesh Jain: Visual Computing Meets Data Modeling: Defining Objects in Multicamera Video Databases. Storage and Retrieval for Image and Video Databases (SPIE) 1996: 120-131

Amarnath Gupta, Terry E. Weymouth, Ramesh Jain: An Extended Object-Oriented Data Model for Large Image Bases. SSD 1991: 45-61

Amarnath Gupta, Terry E. Weymouth, Ramesh Jain: Semantic Queries in Image Databases. VDB 1991: 201-215

Amarnath Gupta, Terry E. Weymouth, Ramesh Jain: Semantic Queries with Pictures: The VIMSYS Model. VLDB 1991: 69-79