Aaron L. Halpern

Paolo Carnevali, Jonathan Baccash, Aaron L. Halpern, Igor Nazarenko, Geoffrey B. Nilsen, Krishna P. Pant, Jessica C. Ebert, Anushka Brownley, Matt Morenzoni, Vitali Karpinchyk, Bruce Martin, Dennis G. Ballinger, Radoje Drmanac: Computational Techniques for Human Genome Resequencing Using Mated Gapped Reads. Journal of Computational Biology 19(3): 279-292 (2012)

Yuan Li, Aaron L. Halpern, Shaojie Zhang: TreeLign: simultaneous stepwise alignment and phylogenetic positioning, with its application to automatic phylogenetic assignment of 16S rRNAs. BCB 2011: 451-456

Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton: Consensus generation and variant detection by Celera Assembler. Bioinformatics 24(8): 1035-1040 (2008)

Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29

Olaf Delgado Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson: Syntenic Layout of Two Assemblies of Related Genomes. German Conference on Bioinformatics 2004: 3-12

Daniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry: Efficiently detecting polymorphisms during the fragment assembly process. ISMB 2002: 294-302

Aaron L. Halpern, Daniel H. Huson, Knut Reinert: Segment Match Refinement and Applications. WABI 2002: 126-139

Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers: Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) 2001: 132-139

Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail: Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2001: 7-18

Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton: Comparing Assemblies Using Fragments and Mate-Pairs. WABI 2001: 294-306