Ghassan Hamarneh

Peyman Rahmati, Andy Adler, Ghassan Hamarneh: Mammography segmentation with maximum likelihood active contours. Medical Image Analysis 16(6): 1167-1186 (2012)

Lisa Tang, Tim Bressmann, Ghassan Hamarneh: Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. Medical Image Analysis 16(8): 1503-1520 (2012)

Chris McIntosh, Ghassan Hamarneh: Medial-Based Deformable Models in Nonconvex Shape-Spaces for Medical Image Segmentation. IEEE Trans. Med. Imaging 31(1): 33-50 (2012)

Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh: Modeling Brain Activation in fMRI Using Group MRF. IEEE Trans. Med. Imaging 31(5): 1113-1123 (2012)

K. Krishna Nand, Ghassan Hamarneh, Rafeef Abugharbieh: Diffusion tensor image processing using biquaternions. ISBI 2012: 538-541

Lisa Tang, Alfred O. Hero, Ghassan Hamarneh: Locally-adaptive similarity metric for deformable medical image registration. ISBI 2012: 728-731

Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh: Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework. MICCAI (2) 2012: 98-105

Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao Zhang, Daniel Cohen-Or, Lior Wolf, Ghassan Hamarneh: Prior Knowledge for Part Correspondence. Comput. Graph. Forum 30(2): 553-562 (2011)

Andrea Tagliasacchi, Matt Olson, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or: VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Comput. Graph. Forum 30(5): 1563-1571 (2011)

Oliver van Kaick, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or: A Survey on Shape Correspondence. Comput. Graph. Forum 30(6): 1681-1707 (2011)

Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin R. Smith, Marinko Sarunic: Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. IEEE Trans. Med. Imaging 30(2): 484-496 (2011)

Ghassan Hamarneh, Chris McIntosh, Mark S. Drew: Perception-Based Visualization of Manifold-Valued Medical Images Using Distance-Preserving Dimensionality Reduction. IEEE Trans. Med. Imaging 30(7): 1314-1327 (2011)

Chris McIntosh, Ghassan Hamarneh: Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial-based Shape Deformation. Genetic and Evolutionary Computation: Medical Applications 2011

Chris McIntosh, Ghassan Hamarneh, Matthew Toom, Roger C. Tam: Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects Using Crawlers and Minimal Paths. HISB 2011: 25-31

Brian G. Booth, Ghassan Hamarneh: Consistent Information Content Estimation for Diffusion Tensor MR Images. HISB 2011: 166-173

Shawn Andrews, Chris McIntosh, Ghassan Hamarneh: Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space. ICCV 2011: 2096-2103

Brian G. Booth, Ghassan Hamarneh: Exact integration of diffusion orientation distribution functions for graph-based diffusion MRI analysis. ISBI 2011: 935-938

K. Krishna Nand, Rafeef Abugharbieh, Brian G. Booth, Ghassan Hamarneh: Detecting Structure in Diffusion Tensor MR Images. MICCAI (2) 2011: 90-97

Lisa Tang, Ghassan Hamarneh, Tim Bressmann: A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences. MLMI 2011: 151-158

Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh: Active Learning for Interactive 3D Image Segmentation. MICCAI (3) 2011: 603-610

Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, W. Darlene Reid: Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles. MICCAI (3) 2011: 651-658

Ahmed Saad, Torsten Möller, Ghassan Hamarneh: ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. Comput. Graph. Forum 29(3): 1113-1122 (2010)

Ghassan Hamarneh, Preet Jassi: VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis. Comp. Med. Imag. and Graph. 34(8): 605-616 (2010)

Lisa Tang, Ghassan Hamarneh, Anna Celler: Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. J. Digital Imaging 23(3): 258-267 (2010)

Aaron D. Ward, Ghassan Hamarneh: The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning. IEEE Trans. Pattern Anal. Mach. Intell. 32(6): 1084-1096 (2010)

Ahmed Saad, Ghassan Hamarneh, Torsten Möller: Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Trans. Vis. Comput. Graph. 16(6): 1366-1375 (2010)

Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh: Group MRF for fMRI activation detection. CVPR 2010: 2887-2894

Hengameh Mirzaalian, Ghassan Hamarneh: Vessel scale-selection using MRF optimization. CVPR 2010: 3273-3279

Josna Rao, Rafeef Abugharbieh, Ghassan Hamarneh: Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. ECCV (4) 2010: 651-665

Peyman Rahmati, Ghassan Hamarneh, Doron Nussbaum, Andy Adler: A New Preprocessing Filter for Digital Mammograms. ICISP 2010: 585-592

Shawn Andrews, Ghassan Hamarneh, Ahmed Saad: Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation. MICCAI (3) 2010: 9-16

Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron D. Ward, Roger C. Tam: Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. MICCAI (3) 2010: 17-24

Bernard Ng, Arash Vahdat, Ghassan Hamarneh, Rafeef Abugharbieh: Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. MLMI 2010: 108-115

Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh: Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. MCV 2010: 204-213

Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh: Detecting Brain Activation in fMRI Using Group Random Walker. MICCAI (2) 2010: 331-338

Neda Changizi, Ghassan Hamarneh: Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping. MICCAI (3) 2010: 563-570

Lisa Tang, Ghassan Hamarneh, Rafeef Abugharbieh: Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. WBIR 2010: 173-185

Ghassan Hamarneh, Xiaoxing Li: Watershed segmentation using prior shape and appearance knowledge. Image Vision Comput. 27(1-2): 59-68 (2009)

Warren Cheung, Ghassan Hamarneh: n -SIFT: n -Dimensional Scale Invariant Feature Transform. IEEE Transactions on Image Processing 18(9): 2012-2021 (2009)

Hengameh Mirzaalian, Ghassan Hamarneh, Tim K. Lee: A graph-based approach to skin mole matching incorporating template-normalized coordinates. CVPR 2009: 2152-2159

Ghassan Hamarneh: Multi-label MRF Optimization via a Least Squares s - t Cut. ISVC (1) 2009: 1055-1066

Chris McIntosh, Ghassan Hamarneh: Optimal Weights for Convex Functionals in Medical Image Segmentation. ISVC (1) 2009: 1079-1088

Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh: Adaptive Contextual Energy Parameterization for Automated Image Segmentation. ISVC (1) 2009: 1089-1100

Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin Smith, Marinko Sarunic: Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. MICCAI (1) 2009: 649-656

Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh: Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation. CoRR abs/0906.4131 (2009)

Ghassan Hamarneh: Multi-Label MRF Optimization via Least Squares s-t Cuts. CoRR abs/0907.0204 (2009)

Miranda Poon, Ghassan Hamarneh, Rafeef Abugharbieh: Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. Comp. Med. Imag. and Graph. 32(8): 639-650 (2008)

Lisa Tang, Ghassan Hamarneh, Anna Celler: Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies. Computer Methods and Programs in Biomedicine 92(2): 173-185 (2008)

Aaron D. Ward, Ghassan Hamarneh, Mark E. Schweitzer: 3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. J. Digital Imaging 21(2): 219-234 (2008)

Andrew Rova, Anna Celler, Ghassan Hamarneh: Development of NEMA-based Software for Gamma Camera Quality Control. J. Digital Imaging 21(2): 243-255 (2008)

Lisa Tang, Ghassan Hamarneh: SMRFI: Shape matching via registration of vector-valued feature images. CVPR 2008

Ahmed Saad, Ghassan Hamarneh, Torsten Möller, Benjamin Smith: Kinetic Modeling Based Probabilistic Segmentation for Molecular Images. MICCAI (1) 2008: 244-252

Ghassan Hamarneh, Preet Jassi, Lisa Tang: Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps. MICCAI (1) 2008: 459-467

Ghassan Hamarneh, Judith Hradsky: Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images. IEEE Transactions on Image Processing 16(10): 2463-2475 (2007)

Zhe Fang, Torsten Möller, Ghassan Hamarneh, Anna Celler: Visualization and exploration of time-varying medical image data sets. Graphics Interface 2007: 281-288

Warren Cheung, Ghassan Hamarneh: N-Sift: N-Dimensional Scale Invariant Feature Transform for Matching Medical Images. ISBI 2007: 720-723

Ghassan Hamarneh, Aaron D. Ward, Richard Frank: Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation. ISBI 2007: 1232-1235

Aaron D. Ward, Ghassan Hamarneh: Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. MICCAI (1) 2007: 278-285

Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh: Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. MICCAI (2) 2007: 444-451

Chris McIntosh, Ghassan Hamarneh: Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. MICCAI (2) 2007: 503-510

Ahmed Saad, Benjamin Smith, Ghassan Hamarneh, Torsten Möller: Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. MICCAI (2) 2007: 726-733

Oliver van Kaick, Ghassan Hamarneh, Hao Zhang, Paul Wighton: Contour Correspondence via Ant Colony Optimization. Pacific Conference on Computer Graphics and Applications 2007: 271-280

Chris McIntosh, Ghassan Hamarneh: Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. CVPR (1) 2006: 1084-1091

Chris McIntosh, Ghassan Hamarneh: Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. MICCAI (1) 2006: 808-815

Xiaoxing Li, Ghassan Hamarneh: Modeling Prior Shape and Appearance Knowledge in Watershed Segmentat. CRV 2005: 27-33

Ghassan Hamarneh, Rafeef Abugharbieh, Tim McInerney: Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. International Journal of Shape Modeling 10(2): 187-210 (2004)

Ghassan Hamarneh, Tomas Gustavsson: Deformable spatio-temporal shape models: extending active shape models to 2D+time. Image Vision Comput. 22(6): 461-470 (2004)

Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, Clemens Kaminski: Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. Journal of Mathematical Imaging and Vision 19(3): 199-218 (2003)

Natasa Kovacevic, Ghassan Hamarneh, R. Mark Henkelman: Anatomically Guided Registration of Whole Body Mouse MR Images. MICCAI (2) 2003: 870-877

Ghassan Hamarneh, X. Josette Chen, Brian Neiman, Jeff Henderson, R. Mark Henkelman: Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. MICCAI (2) 2003: 878-885

Tim McInerney, Ghassan Hamarneh, Martha Elizabeth Shenton, Demetri Terzopoulos: Deformable organisms for automatic medical image analysis. Medical Image Analysis 6(3): 251-266 (2002)

Ghassan Hamarneh, Tomas Gustavsson: Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. BMVC 2001: 1-10

Ghassan Hamarneh, Tim McInerney, Demetri Terzopoulos: Deformable Organisms for Automatic Medical Image Analysis. MICCAI 2001: 66-76