Sampsa Hautaniemi

Mark J. Cowley, Mark Pinese, Karin S. Kassahn, Nic Waddell, John V. Pearson, Sean M. Grimmond, Andrew V. Biankin, Sampsa Hautaniemi, Jianmin Wu: PINA v2.0: mining interactome modules. Nucleic Acids Research 40(Database-Issue): 862-865 (2012)

Riku Louhimo, Sampsa Hautaniemi: CNAmet: an R package for integrating copy number, methylation and expression data. Bioinformatics 27(6): 887-888 (2011)

Marko Laakso, Sampsa Hautaniemi: Integrative platform to translate gene sets to networks. Bioinformatics 26(14): 1802-1803 (2010)

Reija Autio, Sami Kilpinen, Matti Saarela, Olli-P. Kallioniemi, Sampsa Hautaniemi, Jaakko Astola: Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations. BMC Bioinformatics 10(S-1) (2009)

Reija Autio, Matti Saarela, Anna-Kaarina Järvinen, Sampsa Hautaniemi, Jaakko Astola: Advanced analysis and visualization of gene copy number and expression data. BMC Bioinformatics 10(S-1) (2009)

Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi: Fast Gene Ontology based clustering for microarray experiments. BioData Mining 1 (2008)

Marko Laakso, Sari Tuupanen, Auli Karhu, Rainer Lehtonen, Lauri A. Aaltonen, Sampsa Hautaniemi: Computational identification of candidate loci for recessively inherited mutation using high-throughput SNP arrays. Bioinformatics 23(15): 1952-1961 (2007)

Harri Lähdesmäki, Sampsa Hautaniemi, Ilya Shmulevich, Olli Yli-Harja: Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. Signal Processing 86(4): 814-834 (2006)

John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra, Jaakko Astola: Jointly Analyzing Gene Expression and Copy Number Data in Breast Cancer Using Data Reduction Models. IEEE/ACM Trans. Comput. Biology Bioinform. 3(1): 2-16 (2006)

Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A. Lauffenburger: Modeling of signal-response cascades using decision tree analysis. Bioinformatics 21(9): 2027-2035 (2005)

John A. Berger, Sampsa Hautaniemi, Anna-Kaarina Järvinen, Henrik Edgren, Sanjit K. Mitra, Jaakko Astola: Optimized LOWESS normalization parameter selection for DNA microarray data. BMC Bioinformatics 5: 194 (2004)

John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra: Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition. CSB 2004: 584-585

Reija Autio, Sampsa Hautaniemi, Päivikki Kauraniemi, Olli Yli-Harja, Jaakko Astola, Maija Wolf, Anne Kallioniemi: CGH-Plotter: MATLAB toolbox for CGH-data analysis. Bioinformatics 19(13): 1714-1715 (2003)

Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni: A novel strategy for microarray quality control using Bayesian networks. Bioinformatics 19(16): 2031-2038 (2003)

Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi: Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps. Machine Learning 52(1-2): 45-66 (2003)