Thomas Hinze

Thomas Hinze, Benjamin Schell, Mathias Schumann, Christian Bodenstein: Maintenance of Chronobiological Information by P System Mediated Assembly of Control Units for Oscillatory Waveforms and Frequency. Int. Conf. on Membrane Computing 2012: 208-227

Thomas Hinze, Mathias Schumann, Christian Bodenstein, Ines Heiland, Stefan Schuster: Biochemical Frequency Control by Synchronisation of Coupled Repressilators: An In Silico Study of Modules for Circadian Clock Systems. Comp. Int. and Neurosc. 2011 (2011)

Thomas Hinze, Christian Bodenstein, Ines Heiland, Stefan Schuster: Capturing Biological Frequency Control of Circadian Clocks by Reaction System Modularization. ERCIM News 2011(85): 27-28 (2011)

Thomas Hinze, Mathias Schumann, Stefan Schuster: Synchronisation of Biological Clock Signals - Capturing Coupled Repressilators from a Control Systems Perspective. BIOSIGNALS 2011: 101-106

Thomas Hinze, Christian Bodenstein, Benedict Schau, Ines Heiland, Stefan Schuster: Chemical Analog Computers for Clock Frequency Control Based on P Modules. Int. Conf. on Membrane Computing 2011: 182-202

Marian Gheorghe, Thomas Hinze, Gheorghe Paun, Grzegorz Rozenberg, Arto Salomaa (Eds.): Membrane Computing - 11th International Conference, CMC 2010, Jena, Germany, August 24-27, 2010. Revised Selected Papers. Lecture Notes in Computer Science 6501, Springer 2011, isbn 978-3-642-18122-1

Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Maiko Lohel, Thomas Hinze, Peter Dittrich: Rule-based spatial modeling with diffusing, geometrically constrained molecules. BMC Bioinformatics 11: 307 (2010)

James Decraene, Thomas Hinze: A Multidisciplinary Survey of Computational Techniques for the Modelling, Simulation and Analysis of Biochemical Networks. J. UCS 16(9): 1152-1175 (2010)

Gabi Escuela, Thomas Hinze, Peter Dittrich, Stefan Schuster, Mario Moreno-Álvarez: Modelling Modified Atmosphere Packaging for Fruits and Vegetables using Membrane Systems. BIOSIGNALS 2010: 306-311

Henning Bordihn, Rudolf Freund, Markus Holzer, Thomas Hinze, Martin Kutrib, Friedrich Otto (Eds.): Second Workshop on Non-Classical Models for Automata and Applications - NCMA 2010, Jena, Germany, August 23 - August 24, 2010. Proceedings. books@ocg.at 263, Austrian Computer Society 2010, isbn 978-3-85403-263-2

Thomas Hinze, Raffael Faßler, Thorsten Lenser, Peter Dittrich: Register Machine Computations on Binary Numbers by oscillating and Catalytic Chemical reactions Modelled Using Mass-Action kinetics. Int. J. Found. Comput. Sci. 20(3): 411-426 (2009)

Naoki Matsumaru, Thomas Hinze, Peter Dittrich: Organization-Oriented Chemical Programming of Distributed Artifacts. IJNMC 1(4): 1-19 (2009)

Thomas Hinze, Thorsten Lenser, Gabi Escuela, Ines Heiland, Stefan Schuster: Modelling Signalling Networks with Incomplete Information about Protein Activation States: A P System Framework of the KaiABC Oscillator. Workshop on Membrane Computing 2009: 316-334

Thomas Hinze, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich, Sikander Hayat: Biosignal-Based Computing By AHL Induced Synthetic Gene Regulatory Networks - From an in vivo Flip-Flop Implementation to Programmable Computing Agents. BIOSIGNALS (1) 2008: 162-169

Hendrik Rohn, Bashar Ibrahim, Thorsten Lenser, Thomas Hinze, Peter Dittrich: Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps. EvoBIO 2008: 177-187

Thomas Hinze, Raffael Faßler, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich: Event-Driven Metamorphoses of P Systems. Workshop on Membrane Computing 2008: 231-245

Thorsten Lenser, Thomas Hinze, Bashar Ibrahim, Peter Dittrich: Towards Evolutionary Network Reconstruction Tools for Systems Biology. EvoBIO 2007: 132-142

Thomas Hinze, Sikander Hayat, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich: Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo. Workshop on Membrane Computing 2007: 320-335

Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich: Toward Organization-Oriented Chemical Programming: A Case Study with the Maximal Independent Set Problem. Advances in Biologically Inspired Information Systems 2007: 147-163

Thomas Hinze, Thorsten Lenser, Peter Dittrich: A Protein Substructure Based P System for Description and Analysis of Cell Signalling Networks. Workshop on Membrane Computing 2006: 409-423

Erwin P. Stoschek, Monika Sturm, Thomas Hinze: DNA-Computing - ein funktionales Modell im laborpraktischen Experiment. Inform., Forsch. Entwickl. 16(1): 35-52 (2001)

Thomas Hinze, Uwe Hatnik, Monika Sturm: An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification. DNA 2001: 1-13