Shinn-Ying Ho

Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, Shinn-Ying Ho: Prediction of Mouse Senescence from HE-Stain Liver Images Using an Ensemble SVM Classifier. ACIIDS (2) 2013: 325-334

Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen, Shinn-Ying Ho: Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition. BMC Bioinformatics 13(S-17): S3 (2012)

Chin-Teng Lin, Shu-Fang Tsai, Hua-Chin Lee, Hui-Ling Huang, Shinn-Ying Ho, Li-Wei Ko: Motion sickness estimation system. IJCNN 2012: 1-6

Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tzai-Wen Chiu, Phasit Charoenkwan, Eric Hwang: NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery. BMC Bioinformatics 12: 230 (2011)

Chun-Wei Tung, Matthias Ziehm, Andreas Kamper, Oliver Kohlbacher, Shinn-Ying Ho: POPISK: T-cell reactivity prediction using support vector machines and string kernels. BMC Bioinformatics 12: 446 (2011)

Hui-Ling Huang, I.-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu, Wen-Lin Huang, Shinn-Jang Ho, Shinn-Ying Ho: Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. BMC Bioinformatics 12(S-1): S47 (2011)

Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shinn-Ying Ho: Predicting protein subnuclear localization using GO-amino-acid composition features. Biosystems 98(2): 73-79 (2009)

Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu: Protein subcellular localization prediction of eukaryotes using a knowledge-based approach. BMC Bioinformatics 10(S-15): 8 (2009)

Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang: sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Research 37(Database-Issue): 150-154 (2009)

Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, Shinn-Ying Ho: ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. BMC Bioinformatics 9 (2008)

Chun-Wei Tung, Shinn-Ying Ho: Computational identification of ubiquitylation sites from protein sequences. BMC Bioinformatics 9 (2008)

Shinn-Ying Ho, Hung-Sui Lin, Weei-Hurng Liauh, Shinn-Jang Ho: OPSO: Orthogonal Particle Swarm Optimization and Its Application to Task Assignment Problems. IEEE Transactions on Systems, Man, and Cybernetics, Part A 38(2): 288-298 (2008)

Ming-Hao Hung, Li-Sun Shu, Shinn-Jang Ho, Shiow-Fen Hwang, Shinn-Ying Ho: A Novel Intelligent Multiobjective Simulated Annealing Algorithm for Designing Robust PID Controllers. IEEE Transactions on Systems, Man, and Cybernetics, Part A 38(2): 319-330 (2008)

Hui-Ling Huang, Kuan-Wei Chen, Shinn-Jang Ho, Shinn-Ying Ho: Inferring S-system models of genetic networks from a time-series real data set of gene expression profiles. IEEE Congress on Evolutionary Computation 2008: 2788-2793

Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shinn-Ying Ho: ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization. CIBCB 2008: 201-206

Chun-Wei Tung, Shinn-Ying Ho: POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties. Bioinformatics 23(8): 942-949 (2007)

Liang-Tsung Huang, M. Michael Gromiha, Shinn-Ying Ho: iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations. Bioinformatics 23(10): 1292-1293 (2007)

Hui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho: Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers. Biosystems 90(1): 78-86 (2007)

Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang: Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. Biosystems 90(1): 234-241 (2007)

Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho: Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method. Biosystems 90(2): 405-413 (2007)

Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho: ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. Biosystems 90(2): 573-581 (2007)

Hung-Ming Chen, Bo-Fu Liu, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho: SODOCK: Swarm optimization for highly flexible protein-ligand docking. Journal of Computational Chemistry 28(2): 612-623 (2007)

Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang: An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 648-704 (2007)

Hui-Ling Huang, Yi-Hsiung Chen, Dwight D. Koeberl, Shinn-Ying Ho: Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data. CIBCB 2007: 32-38

Shinn-Jang Ho, Chia-Yun Chang, Liang-Tsung Huang, Shiow-Fen Hwang, Shinn-Ying Ho: Acquisition of rule-based knowledge for analyzing DNA-binding sites in proteins. Infoscale 2007: 39

Liang-Tsung Huang, M. Michael Gromiha, Shiow-Fen Hwang, Shinn-Ying Ho: Knowledge acquisition and development of accurate rules for predicting protein stability changes. Computational Biology and Chemistry 30(6): 408-415 (2006)

Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho: Optimizing fuzzy neural networks for tuning PID controllers using an orthogonal simulated annealing algorithm OSA. IEEE T. Fuzzy Systems 14(3): 421-434 (2006)

Shinn-Ying Ho, Chih-Hung Hsieh, Kuan-Wei Chen, Hui-Ling Huang, Hung-Ming Chen, Shinn-Jang Ho: Scoring Method for Tumor Prediction from Microarray Data Using an Evolutionary Fuzzy Classifier. PAKDD 2006: 520-529

Shinn-Jang Ho, Wen-Yuan Ku, Jun-Wun Jou, Ming-Hao Hung, Shinn-Ying Ho: Intelligent Particle Swarm Optimization in Multi-objective Problems. PAKDD 2006: 790-800

Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho: Design of nearest neighbor classifiers: multi-objective approach. Int. J. Approx. Reasoning 40(1-2): 3-22 (2005)

Bo-Fu Liu, Hung-Ming Chen, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho: Flexible protein-ligand docking using particle swarm optimization. Congress on Evolutionary Computation 2005: 251-258

Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang: Evolutionary divide-and-conquer approach to inferring S-system models of genetic networks. Congress on Evolutionary Computation 2005: 691-698

Shinn-Ying Ho, Chong-Cheng Lee, Hung-Ming Chen, Hui-Ling Huang: Efficient gene selection for classification of microarray data. Congress on Evolutionary Computation 2005: 1753-1760

Larry Huang, Wen-Lin Huang, Shinn-Ying Ho, Shiow-Fen Hwang: Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision Tree. CIBCB 2005: 521-525

Bo-Fu Liu, Hung-Ming Chen, Jian-Hung Chen, Shiow-Fen Hwang, Shinn-Ying Ho: MeSwarm: memetic particle swarm optimization. GECCO 2005: 267-268

Jian-Hung Chen, Shinn-Ying Ho, David E. Goldberg: Quality-time analysis of multi-objective evolutionary algorithms. GECCO 2005: 1455-1462

Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu: Inference of S-system Models for Large-Scale Genetic Networks. ICDE Workshops 2005: 1155

Shinn-Ying Ho, Li-Sun Shu, Jian-Hung Chen: Intelligent evolutionary algorithms for large parameter optimization problems. IEEE Trans. Evolutionary Computation 8(6): 522-541 (2004)

Shinn-Ying Ho, Hung-Ming Chen, Shinn-Jang Ho, Tai-Kang Chen: Design of accurate classifiers with a compact fuzzy-rule base using an evolutionary scatter partition of feature space. IEEE Transactions on Systems, Man, and Cybernetics, Part B 34(2): 1031-1044 (2004)

Shin-Hang Ho, Shinn-Ying Ho, Li-Sun Shu: OSA: orthogonal simulated annealing algorithm and its application to designing mixed H/sub 2//H/sub /spl infin// optimal controllers. IEEE Transactions on Systems, Man, and Cybernetics, Part A 34(5): 588-600 (2004)

Shinn-Ying Ho, Shinn-Jang Ho, Yi-Kuang Lin, W. C.-C. Chu: An orthogonal simulated annealing algorithm for large floorplanning problems. IEEE Trans. VLSI Syst. 12(8): 874-877 (2004)

Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho, Jian-Hung Chen, Ming-Hao Hung: A Novel Multi-objective Orthogonal Simulated Annealing Algorithm for Solving Multi-objective Optimization Problems with a Large Number of Parameters. GECCO (1) 2004: 737-747

Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho: Design of Nearest Neighbor Classifiers Using an Intelligent Multi-objective Evolutionary Algorithm. PRICAI 2004: 262-271

Hui-Ling Huang, Shinn-Ying Ho: Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm. Pattern Recognition 36(5): 1065-1081 (2003)

Shinn-Ying Ho, Kual-Zheng Lee: Design and Analysis of an Efficient Evolutionary Image Segmentation Algorithm. VLSI Signal Processing 35(1): 29-42 (2003)

Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho: A Novel Orthogonal Simulated Annealing Algorithm for Optimization of Electromagnetic Problems. IDEAL 2003: 415-420

Kual-Zheng Lee, Ting-Wei Liu, Shinn-Ying Ho: Model-Based Pose Estimation of Human Motion Using Orthogonal Simulated Annealing. IDEAL 2003: 983-991

Kual-Zheng Lee, Wei-Che Chuang, Shinn-Ying Ho: A Non-parametric Image Segmentation Algorithm Using an Orthogonal Experimental Design Based Hill-Climbing. IDEAL 2003: 1076-1081

Shinn-Ying Ho, Chia-Cheng Liu, Soundy Liu: Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm. Pattern Recognition Letters 23(13): 1495-1503 (2002)

Jian-Hung Chen, David E. Goldberg, Shinn-Ying Ho, Kumara Sastry: Fitness Inheritance In Multi-objective Optimization. GECCO 2002: 319-326

Shinn-Ying Ho, Hui-Ling Huang: Facial modeling from an uncalibrated face image using a coarse-to-fine genetic algorithm. Pattern Recognition 34(5): 1015-1031 (2001)

Shinn-Ying Ho, Yeong-Chinq Chen: An efficient evolutionary algorithm for accurate polygonal approximation. Pattern Recognition 34(12): 2305-2317 (2001)

Shinn-Ying Ho, Hui-Ling Huang: Facial modeling from an uncalibrated face image using flexible generic parameterized facial models. IEEE Transactions on Systems, Man, and Cybernetics, Part B 31(5): 706-719 (2001)

Shinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho: Designing an Efficient Fuzzy classifier Using an Intelligent Genetic Algorithm. COMPSAC 2000: 293-298

Shinn-Ying Ho, Kual-Zheng Lee: A Simple and Fast GA-SA hybrid Image Segmentation Algorithm. GECCO 2000: 718-725

Shinn-Ying Ho, Hui-Ling Huang: An analytic solution for the pose determination of human faces from a monocular image. Pattern Recognition Letters 19(11): 1045-1054 (1998)

Zen Chen, Shinn-Ying Ho: Incremental model building of polyhedral objects using structured light. Pattern Recognition 26(1): 33-46 (1993)

Zen Chen, Chao-Ming Wang, Shinn-Ying Ho: An effective search approach to camera parameter estimation using an arbitrary planar calibration object. Pattern Recognition 26(5): 655-666 (1993)

Zen Chen, Shinn-Ying Ho, Din-Chang Tseng: Polyhedral face reconstruction and modeling from a single image with structured light. IEEE Transactions on Systems, Man, and Cybernetics 23(3): 864-872 (1993)

Zen Chen, Shinn-Ying Ho: Computer vision for robust 3D aircraft recognition with fast library search. Pattern Recognition 24(5): 375-390 (1991)