Katsuhisa Horimoto

Akiko Toshimori, Kunio Shimizu, Tingting Yu, Zhining Fan, Xinrong Zhou, Shigeru Saito, Katsuhisa Horimoto, Xia Jinrong, Huarong Zhou: Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis. CISIS 2012: 567-572

Katsuhisa Horimoto, Masahiko Nakatsui, Nikolaj Popov (Eds.): Algebraic and Numeric Biology - 4th International Conference, ANB 2010, Hagenberg, Austria, July 31- August 2, 2010, Revised Selected Papers. Lecture Notes in Computer Science 6479, Springer 2012, isbn 978-3-642-28066-5

Masahiko Nakatsui, Alexandre Sedoglavic, François Lemaire, François Boulier, Asli Ürgüplü, Katsuhisa Horimoto: A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors. ANB 2010: 149-166

Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto: A procedure for identifying master regulators in conjunction with network screening and inference. BIBM 2010: 296-301

Hirokazu Anai, Katsuhisa Horimoto: Foreword. Mathematics in Computer Science 2(3): 399-400 (2009)

Tatsuya Akutsu, Takeyuki Tamura, Katsuhisa Horimoto: Completing Networks Using Observed Data. ALT 2009: 126-140

Shigeru Saito, Masao Honda, Shuichi-I. Kaneko, Katsuhisa Horimoto: Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma. CDC 2009: 5624-5630

Katsuhisa Horimoto, Shigeru Saito: Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli. SMC 2009: 4280-4286

Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu: Integer programming-based approach to allocation of reporter genes for cell array analysis. IJBRA 4(4): 385-399 (2008)

Daisuke Tominaga, Katsuhisa Horimoto: Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion. J. Bioinformatics and Computational Biology 6(4): 747-757 (2008)

Hiroshi Yoshida, Katsuhisa Horimoto, Hirokazu Anai: Inference of Probabilities over a Stochastic IL-System by Quantifier Elimination. Mathematics in Computer Science 1(3): 473-485 (2008)

Katsuhisa Horimoto, Georg Regensburger, Markus Rosenkranz, Hiroshi Yoshida (Eds.): Algebraic Biology, Third International Conference, AB 2008, Castle of Hagenberg, Austria, July 31-August 2, 2008, Proceedings. Lecture Notes in Computer Science 5147, Springer 2008, isbn 978-3-540-85100-4

Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto: Derivation of rigorous conditions for high cell-type diversity by algebraic approach. Biosystems 90(2): 486-495 (2007)

Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shu-ichi Kaneko, Katsuhisa Horimoto: Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto: Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach. AB 2007: 110-124

Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333

Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto: An Algebraic-Numeric Algorithm for the Model Selection in Kinetic Networks. CASC 2007: 433-447

Hirokazu Anai, Katsuhisa Horimoto, Temur Kutsia (Eds.): Algebraic Biology, Second International Conference, AB 2007, Castle of Hagenberg, Austria, July 2-4, 2007, Proceedings. Lecture Notes in Computer Science 4545, Springer 2007, isbn 978-3-540-73432-1

Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics 22(20): 2488-2492 (2006)

Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto: Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Transactions 89-A(5): 1215-1222 (2006)

K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu: Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms. J. Bioinformatics and Computational Biology 4(1): 19-42 (2006)

Hirokazu Anai, Shigeo Orii, Katsuhisa Horimoto: Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination. J. Bioinformatics and Computational Biology 4(5): 1097-1118 (2006)

Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto: ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Research 33(Web-Server-Issue): 659-664 (2005)

Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu: Clique-based algorithms for protein threading with profiles and constraints. APBC 2005: 51-64

Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto: ASIAN: a website for network inference. Bioinformatics 20(16): 2853-2856 (2004)

Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto: Protein Threading with Profiles and Constraints. BIBE 2004: 537-544

Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto: Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Processing 83(4): 777-788 (2003)

Hiroyuki Toh, Katsuhisa Horimoto: Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinformatics 18(2): 287-297 (2002)

Katsuhisa Horimoto, Satoshi Fukuchi, Kentaro Mori: Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes. Bioinformatics 17(9): 791-802 (2001)

Katsuhisa Horimoto, Hiroyuki Toh: Statistical estimation of cluster boundaries in gene expression profile data. Bioinformatics 17(12): 1143-1151 (2001)

Katsuhisa Horimoto, M. Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka: A method for comparing circular genomes from gene locations: application to mitochondrial genomes. Bioinformatics 14(9): 789-802 (1998)

Katsuhisa Horimoto, Kunio Oshima, Akira Tsugita, Jinya Otsuka: Protein Superfamily Database (Prosup). CODATA 1994: 255-262