Jorng-Tzong Horng

Tzu-Hao Chang, Li-Ching Wu, Tzong-Yi Lee, Shu-Pin Chen, Hsien-Da Huang, Jorng-Tzong Horng: EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. Journal of Computer-Aided Molecular Design 27(1): 91-103 (2013)

Tzu-Hao Chang, Li-Ching Wu, Yu-Ting Chen, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng: Characterization and prediction of mRNA polyadenylation sites in human genes. Med. Biol. Engineering and Computing 49(4): 463-472 (2011)

Li-Ching Wu, Cheng-Wei Chang, Tsung-Ming Chao, Rong-Hwei Yeh, Jorng-Tzong Horng: A System to Discover Correlations within a Biological Pathway between the Expression Levels of Genes. BIBE 2011: 15-20

Jorng-Tzong Horng, Li-Ching Wu, Shun-Kai Liu, Cheng-Wei Chang, Tsung-Ming Chao, Rong-Hwei Yeh, Kuang-Fu Cheng: A Prediction of mRNA Polyadenylation Sites in Human Genes. BIBE 2011: 27-32

Li-Ching Wu, Jhih-Long Huang, Jorng-Tzong Horng, Hsien-Da Huang: An expert system to identify co-regulated gene groups from time-lagged gene clusters using cell cycle expression data. Expert Syst. Appl. 37(3): 2202-2213 (2010)

Tzu-Hao Chang, Li-Ching Wu, Jun-Hong Lin, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng: Prediction of small non-coding RNA in bacterial genomes using support vector machines. Expert Syst. Appl. 37(8): 5549-5557 (2010)

Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng: Detecting LTR structures in human genomic sequences using profile hidden Markov models. Expert Syst. Appl. 36(1): 668-674 (2009)

Yi-Ming Sun, Jorng-Tzong Horng, Jyh-Huang Torng, Li-Ching Wu: An expert system to identify transcription factor binding target genes by phylogenetic footprinting. Expert Syst. Appl. 36(3): 4923-4928 (2009)

Li-Cheng Wu, Jian-Xin Lee, Hsien-Da Huang, Baw-Juine Liu, Jorng-Tzong Horng: An expert system to predict protein thermostability using decision tree. Expert Syst. Appl. 36(5): 9007-9014 (2009)

Jorng-Tzong Horng, Li-Cheng Wu, Baw-Juine Liu, Jun-Li Kuo, Wen-Horng Kuo, Jin-Jian Zhang: An expert system to classify microarray gene expression data using gene selection by decision tree. Expert Syst. Appl. 36(5): 9072-9081 (2009)

Li-Ching Wu, Jorng-Tzong Horng, Yong-An Chen: A Computation to Integrate the Analysis of Genetic Variations Occurring within Regulatory Elements and Their Possible Effects. Journal of Computational Biology 16(12): 1731-1747 (2009)

Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang: Incorporating structural characteristics for identification of protein methylation sites. Journal of Computational Chemistry 30(9): 1532-1543 (2009)

Wen-Chi Chang, Tzong-Yi Lee, Dray-Ming Shien, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang, Rong-Long Pan: Incorporating support vector machine for identifying protein tyrosine sulfation sites. Journal of Computational Chemistry 30(15): 2526-2537 (2009)

Yi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu: A Human DNA Methylation Site Predictor Based on SVM. BIBE 2009: 22-29

Tzu-Hao Chang, Li-Ching Wu, Chi-Ta Yeh, Cheng-Wei Chang, Baw-Jhiune Liu, Hsien-Da Huang, Jorng-Tzong Horng: RiboSW . BIBE 2009: 260-265

Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang: RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Research 36(Web-Server-Issue): 91-96 (2008)

Li-Ching Wu, Jorng-Tzong Horng, Hsien-Da Huang, Wei-Long Chen: Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree. IEEE Transactions on Information Technology in Biomedicine 12(6): 689-695 (2008)

Ming-Hui Jin, Jorng-Tzong Horng, Meng-Feng Tsai, Eric Hsiao-Kuang Wu: Location query based on moving behaviors. Inf. Syst. 32(3): 385-401 (2007)

Li-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai: Primer design for multiplex PCR using a genetic algorithm. Soft Comput. 11(9): 855-863 (2007)

Yi-Ping Lin, Po-Yao Chao, Gwo-Dong Chen, Jorng-Tzong Horng: Integrated Paper Slide in Classroom to Enhance Interaction Using Digital Pens. ICALT 2007: 502-504

Li-Cheng Wu, Jorng-Tzong Horng, Shir-Ly Huang, Hsien-Da Huang, Baw-Jhiune Liu: Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures. Journal of Computational Chemistry 27(6): 798-808 (2006)

Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang: An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. Journal of Computational Chemistry 27(9): 1020-1032 (2006)

Tzu-Hao Chang, Hsien-Da Huang, Tzu-Neng Chuang, Dray-Ming Shien, Jorng-Tzong Horng: RNAMST: efficient and flexible approach for identifying RNA structural homologs. Nucleic Acids Research 34(Web-Server-Issue): 423-428 (2006)

Ann-Ping Tsou, Yi-Ming Sun, Chia-Lin Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu: Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data. IEEE Transactions on Information Technology in Biomedicine 10(3): 550-558 (2006)

Feng-Mao Lin, Hsien-Da Huang, Y.-C. Chang, Ann-Ping Tsou, P.-L. Chan, L.-C. Wu, Meng-Feng Tsai, Jorng-Tzong Horng: Database to Dynamically Aid Probe Design for Virus Identification. IEEE Transactions on Information Technology in Biomedicine 10(4): 705-713 (2006)

Len-Yan Sun, Chih-Wei Chang, Gwo-Dong Chen, Jorng-Tzong Horng: Building a Relational Robot to be Student's Private Learning Secretary. ICALT 2006: 306-308

Hsien-Da Huang, Jorng-Tzong Horng, Li-Cheng Wu, Shu-Fen Fang: Discovering Common Structural Motifs of Ribosomal Rna Secondary Structures in Prokaryotes. International Journal on Artificial Intelligence Tools 14(4): 621-640 (2005)

Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang: Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. Journal of Computational Chemistry 26(10): 1032-1041 (2005)

Hsien-Da Huang, Jorng-Tzong Horng, Feng-Mao Lin, Yu-Chung Chang, Chen-Chia Huang: SpliceInfo: an information repository for mRNA alternative splicing in human genome. Nucleic Acids Research 33(Database-Issue): 80-85 (2005)

Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng: KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Research 33(Web-Server-Issue): 226-229 (2005)

Jorng-Tzong Horng, Li-Cheng Wu, Ching-Mei Lin, Bing-He Yang: A genetic algorithm for multiple sequence alignment. Soft Comput. 9(6): 407-420 (2005)

Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko: A database to aid probe design for virus identification. APBC 2005: 309-318

Feng-Mao Lin, Hsien-Da Huang, Hsi-Yuan Huang, Jorng-Tzong Horng: Primer design for multiplex PCR using a genetic algorithm. GECCO 2005: 475-476

Chen-Chung Liu, Shu-Yuan Tao, Jinu-Ning Nee, Baw-Jhiune Liu, Gwo-Dong Chen, Ching-Chi Hsu, Jorng-Tzong Horng: Supporting Activity Awareness for Teams-Games-Tournaments with GSM Network. WMTE 2005: 238-242

Shir-Ly Huang, Li-Cheng Wu, Han-Kuen Liang, Kuan-Ting Pan, Jorng-Tzong Horng, Ming-Tat Ko: PGTdb: a database providing growth temperatures of prokaryotes. Bioinformatics 20(2): 276-278 (2004)

Hsien-Da Huang, Jorng-Tzong Horng, Chia-Hui Chang, Tsung-Shan Tsou, Jing-Yue Hong, Baw-Jhiune Liu: A Computational Approach to Discover Differential Cooperation of Regulartory Sites in Functionally Related Genes in Yeast Genome. J. Inf. Sci. Eng. 20(6): 1141-1159 (2004)

Jorng-Tzong Horng, Feng-Mao Lin, Li-Cheng Wu, Chia-Hui Chang: Performance evaluation of a database of repetitive elements in complete genomes. Journal of Systems and Software 73(3): 491-506 (2004)

Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Feng-Mao Lin, Shir-Ly Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the combination of genetic factors that determine susceptibility to cervical cancer. IEEE Transactions on Information Technology in Biomedicine 8(1): 59-66 (2004)

Jorng-Tzong Horng, Kai-Chih Hu, Li-Cheng Wu, Hsien-Da Huang, Horn-Cheng Lai, Ton-Yuen Chu: Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer. BIBE 2004: 325-332

Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou: RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome. DEXA 2004: 751-760

Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang: Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation. ISPAN 2004: 637-642

Jorng-Tzong Horng, Hsien-Da Huang, Shih-Hsien Wang, Ming-You Chen, Shir-Ly Huang, Jenn-Kang Hwang: Computing motif correlations in proteins. Journal of Computational Chemistry 24(16): 2032-2043 (2003)

Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based Based on Differentially Expressed Genes in Human Genome. J. Inf. Sci. Eng. 19(6): 923-942 (2003)

Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu: Applying evolutionary algorithms to materialized view selection in a data warehouse. Soft Comput. 7(8): 574-581 (2003)

Jorng-Tzong Horng, Feng-Mao Lin, J. H. Lin, Hsien-Da Huang, Baw-Jhiune Liu: Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. IEEE Transactions on Information Technology in Biomedicine 7(2): 93-100 (2003)

Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. BIBE 2003: 297-304

Ming-Hui Jin, Eric Hsiao-Kuang Wu, Jorng-Tzong Horng: Location Query Based on Moving Behaviors. DEXA 2003: 297-307

Chin-Yeh Wang, Baw-Jhiune Liu, Kuo-En Chang, Jorng-Tzong Horng, Gwo-Dong Chen: Using Mobile Techniques in Improving Information Awareness to Promote Learning Performance. ICALT 2003: 106-109

Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, Ueng-Cheng Yang, Yu-Chang Chang: Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae. In Silico Biology 2: 25 (2002)

Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, Li-Cheng Wu, Shir-Ly Huang: The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions. Journal of Computational Biology 9(4): 621-640 (2002)

Ming-Hui Jin, Jorng-Tzong Horng: Evaluating the Performance of a Distributed Database of Repetitive Elements in Complete Genomes. J. Inf. Sci. Eng. 18(4): 533-539 (2002)

Chen-Chung Liu, Baw-Jhiune Liu, Tzu-An Hui, Jorng-Tzong Horng: Web Based Peer Assessment Using Knowledge Acquisition Techniques: Tools for Supporting Contexture Awareness. ICCE 2002: 1338-1339

Ming-Hui Jin, Eric Hsiao-Kuang Wu, Jorng-Tzong Horng: A Channel Allocation Algorithm for large scale cellular networks. ICPADS 2002: 465-470

Jinn-Moon Yang, Jorng-Tzong Horng, Chih-Jen Lin, Cheng-Yan Kao: Optical Coating Designs Using the Family Competition Evolutionary Algorithm. Evolutionary Computation 9(4): 421-443 (2001)

Jorng-Tzong Horng, Ying-Ping Chen, Cheng-Yan Kao: A Theoetical Aspect of a Stochastic Sketching Method for Global Optimization. J. Inf. Sci. Eng. 17(1): 47-71 (2001)

Jorng-Tzong Horng, Chi-Wei Chen: A mechanism for view consistency in a data warehousing system. Journal of Systems and Software 56(1): 23-37 (2001)

Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao: Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. BIBE 2001: 104-111

Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao: Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95

Jorng-Tzong Horng, Ching-Mei Lin, Bing-He Yang, Cheng-Yan Kao: A Genetic Algorithm for Multiple Sequence Alignment. German Conference on Bioinformatics 2001: 167-170

Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng: Mining Combinations of Structural Motif from SSU 16 S Ribosomal RNA Secondary Structures. German Conference on Bioinformatics 2001: 170-173

Li-Cheng Wu, Jorng-Tzong Horng, Feng-Mao Lin: An Approach to Finding Short Tandem Repeats in Complete Genomes. German Conference on Bioinformatics 2001: 238-241

Ming-Hui Jin, Hsiao-Kuang Wu, Jorng-Tzong Horng, Chai-Hsuan Tsai: An evolutionary approach to fixed channel assignment problems with limited bandwidth constraint. ICC 2001: 2100-2104

Hsiao-Kuang Wu, Ming-Hui Jin, Jorng-Tzong Horng: Personal Paging Area Design Based On Mobiles Moving Behaviors. INFOCOM 2001: 21-30

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A Genetic Algorithm with Adaptive Mutations and Family Competition for Training Neural Networks. Int. J. Neural Syst. 10(5): 333-352 (2000)

Jorng-Tzong Horng, Ching-Chang Yeh: Applying genetic algorithms to query optimization in document retrieval. Inf. Process. Manage. 36(5): 737-759 (2000)

Jorng-Tzong Horng, Jye Lu: Modularized design for wrappers/monitors in data warehouse systems. Journal of Systems and Software 54(3): 185-199 (2000)

Ming-Hui Jin, Jorng-Tzong Horng, Hsiao-Kuang Wu, Baw-Jhiune Liu: Reducing the Location Query Cost Based on Behavior-Based Strategy. DEXA 2000: 397-406

Li-Cheng Wu, Jorng-Tzong Horng, Baw-Jhiune Liu, Chin-Yea Wang, Gwo-Dong Chen: Indexing Semistructured Data Using PATRICIA Tree. DEXA 2000: 859-868

Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu, Cheng-Yan Kao: Materialized View Selection in a Data Warehouse Using Evolutionary Algorithms. GECCO 2000: 385

Jorng-Tzong Horng, Ching-Mei Lin, Baw-Jhiune Liu, Cheng-Yan Kao: Using Genetic Algorithms to Solve Multiple Sequence Alignments. GECCO 2000: 883-

Chen-Chung Liu, Gwo-Dong Chen, Kuo-Liang Ou, Baw-Jhiune Liu, Jorng-Tzong Horng: Managing Activity Dynamics of Web-Based Collaborative Applications. International Journal on Artificial Intelligence Tools 8(2): 207-227 (1999)

Ying-Ping Chen, Jorng-Tzong Horng, Cheng-Yan Kao: Stochastic sketching: a new method for global optimization. Soft Comput. 3(2): 101-110 (1999)

Jorng-Tzong Horng, Jye Lu, Baw-Jhiune Liu, Ren-Dar Yang: The Design and Implementation of Modularized Wrappers/ Monitors in a Data Warehouse. DaWaK 1999: 23-32

Ming-Hui Jin, Hsiao-Kuang Wu, Jorng-Tzong Horng: A hierarchical routing protocol for large scale ad hoc network. IPCCC 1999: 379-385

Gwo-Dong Chen, Chen-Chung Liu, Jorng-Tzong Horng: Maintaining Execution Histories for Understanding the Execution of Business Processes. COMPSAC 1998: 528-533

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A New Evolutionary Approach to Developing Neural Autonomous Agents. ICRA 1998: 1411-1416

Yuan-Kai Wang, Kuo-Chin Fan, Jorng-Tzong Horng: Genetic-based search for error-correcting graph isomorphism. IEEE Transactions on Systems, Man, and Cybernetics, Part B 27(4): 588-597 (1997)

Jinn-Moon Yang, Ying-Ping Chen, Jorng-Tzong Horng, Cheng-Yan Kao: Applying Family Competition to Evolution Strategies for Constrained Optimization. Evolutionary Programming 1997: 201-211

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A Continuous Genetic Algorithm for Global Optimization. ICGA 1997: 230-237

Jiunn-Chin Wang, Jorng-Tzong Horng, Kuo-Chin Fan, Baw-Jhiune Liu: A Genetic Algorithm for Structural Query Processing in Hypertext Systems. International Conference on Evolutionary Computation 1996: 506-511

Yuan-Kai Wang, Kuo-Chin Fan, Jorng-Tzong Horng: Error-Correcting Isomorphism of Directed Graphs by Genetic-Based Search. J. Inf. Sci. Eng. 11(1): 127-151 (1995)

Jorng-Tzong Horng, Gwo-Dong Chen, Baw-Jhiune Liu: Extending SQL with Graph Matching and Set Covering for Decision Support Applications. J. of Management Information Systems 11(1): 101-131 (1994)

Jorng-Tzong Horng, Baw-Jhiune Liu: Some aspects of operations in an object-oriented data base based on graphs. Journal of Systems and Software 24(2): 155-179 (1994)

Jorng-Tzong Horng, Baw-Jhiune Liu, Cheng-Yan Kao: A Genetic Algorithm for Database Query Optimization. International Conference on Evolutionary Computation 1994: 350-355

Wen-Chih Huang, Cheng-Yan Kao, Jorng-Tzong Horng: A Genetic Algorithm Approach for Set Covering Problems. International Conference on Evolutionary Computation 1994: 569-574

Jorng-Tzong Horng, Gwo-Dong Chen, Baw-Jhiune Liu: Query Processing Techniques in the Team-Oriented Database Query Language. DASFAA 1993: 245-252

Jorng-Tzong Horng, Baw-Jhiune Liu: Expanding the Notion of Operations in an Object-Oriented Database. DASFAA 1991: 183-191