Chun-Nan Hsu

Dorit S. Hochbaum, Chun-Nan Hsu, Yan T. Yang: Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores. Bioinformatics 28(12): 106-114 (2012)

Jyh-Ying Peng, Yen-Jen Chen, Marc D. Green, Susan L. Forsburg, Chun-Nan Hsu: Simultaneous Segmentation of Cell and Nucleus in Schizosaccharomyces pombe Images with Focus Gradient. HISB 2012: 116

Sung-Chou Li, Wen-Ching Chan, Chun-Hung Lai, Kuo-Wang Tsai, Chun-Nan Hsu, Yuh-Shan Jou, Hua-Chien Chen, Chun-Hong Chen, Wen-chang Lin: UMARS: Un-MAppable Reads Solution. BMC Bioinformatics 12(S-1): S9 (2011)

Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur: The gene normalization task in BioCreative III. BMC Bioinformatics 12(S-8): S2 (2011)

Cheng-Ju Kuo, Maurice H. T. Ling, Chun-Nan Hsu: Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization. BMC Bioinformatics 12(S-8): S6 (2011)

Chun-Nan Hsu, Wee Sun Lee: Preface. Journal of Machine Learning Research - Proceedings Track 20 (2011)

Jyh-Ying Peng, Chung-Chih Lin, Yen-Jen Chen, Lung-Sen Kao, Young-Chau Liu, Chung-Chien Chou, Yi-Hung Huang, Fang-Rong Chang, Yang-Chang Wu, Yuh-Show Tsai, Chun-Nan Hsu: Automatic Morphological Subtyping Reveals New Roles of Caspases in Mitochondrial Dynamics. PLoS Computational Biology 7(10) (2011)

Chun-Nan Hsu: Introduction to special issue on large-scale machine learning. ACM TIST 2(3): 25 (2011)

Rumi Ghosh, Tsung-Ting Kuo, Chun-Nan Hsu, Shou-De Lin, Kristina Lerman: Time-Aware Ranking in Dynamic Citation Networks. ICDM Workshops 2011: 373-380

Yu-Shi Lin, Chung-Chih Lin, Yuh-Show Tsai, Tien-Chuan Ku, Yi-Hung Huang, Chun-Nan Hsu: A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images. Bioinformatics [ISMB] 26(12): 29-37 (2010)

Wen-Ching Chan, Po-Huang Liang, Yan-Ping Shih, Ueng-Cheng Yang, Wen-chang Lin, Chun-Nan Hsu: Learning to predict expression efficacy of vectors in recombinant protein production. BMC Bioinformatics 11(S-1): 21 (2010)

Loris Nanni, Alessandra Lumini, Yu-Shi Lin, Chun-Nan Hsu, Chung-Chih Lin: Fusion of systems for automated cell phenotype image classification. Expert Syst. Appl. 37(2): 1556-1562 (2010)

Cheng-Ju Kuo, Maurice H. T. Ling, Kuan-Ting Lin, Chun-Nan Hsu: BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature. BMC Bioinformatics 10(S-15): 7 (2009)

Han-Shen Huang, Bo-Hou Yang, Yu-Ming Chang, Chun-Nan Hsu: Global and componentwise extrapolations for accelerating training of Bayesian networks and conditional random fields. Data Min. Knowl. Discov. 19(1): 58-94 (2009)

Chun-Nan Hsu, Han-Shen Huang, Yu-Ming Chang, Yuh-Jye Lee: Periodic step-size adaptation in second-order gradient descent for single-pass on-line structured learning. Machine Learning 77(2-3): 195-224 (2009)

Han-Shen Huang, Bo-Hou Yang, Ren-Yuan Lyu, Chun-Nan Hsu: Accelerating EM by targeted aggressive double extrapolation. ICASSP 2009: 1609-1612

Robert F. Murphy, Chun-Nan Hsu, Loris Nanni: Workshop summary: Automated interpretation and modelling of cell images. ICML 2009: 164

Yu-Shi Lin, Yi-Hung Huang, Chung-Chih Lin, Chun-Nan Hsu: Feature Space Transformation for Semi-Supervised Learning for Protein Subcellular Localization in Fluorescence Microscopy Images. ISBI 2009: 414-417

Chun-Nan Hsu, Yu-Ming Chang, Han-Shen Huang, Yuh-Jye Lee: Periodic Step Size Adaptation for Single Pass On-line Learning. NIPS 2009: 763-771

Dau-Cheng Lyu, Ren-Yuan Lyu, Yuang-Chin Chiang, Chun-Nan Hsu: Cross-lingual audio-to-text alignment for multimedia content management. Decision Support Systems 45(3): 554-566 (2008)

Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen Huang, I-Fang Chung: Integrating high dimensional bi-directional parsing models for gene mention tagging. ISMB 2008: 286-294

Chung-Chih Lin, Yuh-Show Tsai, Yu-Shi Lin, Tai-Yu Chiu, Chia-Cheng Hsiung, May-I. Lee, Jeremy C. Simpson, Chun-Nan Hsu: Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization. Bioinformatics 23(24): 3374-3381 (2007)

Chun-Nan Hsu, Jin-Mei Lai, Chia-Hung Liu, Huei-Hun Tseng, Chih-Yun Lin, Kuan-Ting Lin, Hsu-Hua Yeh, Ting-Yi Sung, Wen-Lian Hsu, Li-Jen Su, Sheng-An Lee, Chang-Han Chen, Gen-Cher Lee, D. T. Lee, Yow-Ling Shiue, Chang-Wei Yeh, Chao-Hui Chang, Cheng-Yan Kao, Chi-Ying F. Huang: Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). BMC Bioinformatics 8 (2007)

Kuan-Ting Lin, Chia-Hung Liu, Jen-Jie Chiou, Wen-Hsien Tseng, Kuang-Lung Lin, Chun-Nan Hsu: Gene Name Service: No-Nonsense Alias Resolution Service for Homo Sapiens Genes. Web Intelligence/IAT Workshops 2007: 185-188

Han-Shen Huang, Yu-Ming Chang, Chun-Nan Hsu: Training Conditional Random Fields by Periodic Step Size Adaptation for Large-Scale Text Mining. ICDM 2007: 511-516

Yu-Ming Chang, Cheng-Ju Kuo, Han-Shen Huang, Yu-Shi Lin, Chun-Nan Hsu: Analysis and Enhancement of Conditional Random Fields Gene Mention Taggers in BioCreative II Challenge Evaluation. LBM (Short Papers) 2007

Dau-Cheng Lyu, Ren-Yuan Lyu, Yung-Jien Chiang, Chun-Nan Hsu: 多語聲學單位分類之最佳化研究 (The Study of Acoustic Model Clustering in Multilingual Speech Recognition) [In Chinese]. ROCLING 2007

Hsiang-Yu Yuan, Jen-Jie Chiou, Wen-Hsien Tseng, Chia-Hung Liu, Chuan-Kun Liu, Yi-Jung Lin, Hui-Hung Wang, Adam Yao, Yuan-Tsong Chen, Chun-Nan Hsu: FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. Nucleic Acids Research 34(Web-Server-Issue): 635-641 (2006)

Chun-Nan Hsu, Han-Shen Huang, Bo-Hou Yang: Global and Componentwise Extrapolation for Accelerating Data Mining from Large Incomplete Data Sets with the EM Algorithm. ICDM 2006: 265-274

Dau-Cheng Lyu, Ren-Yuan Lyu, Yuang-Chin Chiang, Chun-Nan Hsu: Language Identification by Using Syllable-Based Duration Classification on Code-Switching Speech. ISCSLP 2006: 475-484

Chun-Nan Hsu, Chia-Hui Chang, Chang-Huain Hsieh, Jiann-Jyh Lu, Chien-Chi Chang: Reconfigurable Web wrapper agents for biological information integration. JASIST 56(5): 505-517 (2005)

Han-Shen Huang, Bou-Ho Yang, Chun-Nan Hsu: Triple Jump Acceleration for the EM Algorithm. ICDM 2005: 649-652

Koung-Lung Lin, Jane Yung-jen Hsu, Han-Shen Huang, Chun-Nan Hsu: A Recommender for Targeted Advertisement of Unsought Products in E-Commerce. CEC 2005: 101-108

Chun-Nan Hsu, Hao-Hsiang Chung, Han-Shen Huang: Mining Skewed and Sparse Transaction Data for Personalized Shopping Recommendation. Machine Learning 57(1-2): 35-59 (2004)

Ren-Yuan Lyu, Dau-Cheng Lyu, Min-Siong Liang, Min-Hong Wang, Yuang-Chin Chiang, Chun-Nan Hsu: A unified framework for large vocabulary speech recognition of mutually unintelligible Chinese "regionalects". INTERSPEECH 2004

Dau-Cheng Lyu, Hong-Wen Hsien, Yung-Xian Lee, Zhong-Ing Liou, Chun-Nan Hsu, Yung-Jien Chiang, Ren-Yuan Lyu: 華台雙語發音變異性之語音辨識研究及PDA之應用 (The study of pronunciation variations in Mandarin and Taiwanese and its application in PDA) [In Chinese]. ROCLING 2004

Chia-Hui Chang, Chun-Nan Hsu, Shao-Chen Lui: Automatic information extraction from semi-structured Web pages by pattern discovery. Decision Support Systems 35(1): 129-147 (2003)

Chia-Hui Chang, Harianto Siek, Jiann-Jyh Lu, Chun-Nan Hsu, Jen-Jie Chiou: Reconfigurable Web Wrapper Agents. IEEE Intelligent Systems 18(5): 34-40 (2003)

Euna Jeong, Chun-Nan Hsu: View Inference for Heterogeneous XML Information Integration. J. Intell. Inf. Syst. 20(1): 81-99 (2003)

Chun-Nan Hsu, Hung-Ju Huang, Tzu-Tsung Wong: Implications of the Dirichlet Assumption for Discretization of Continuous Variables in Naive Bayesian Classifiers. Machine Learning 53(3): 235-263 (2003)

Chun-Nan Hsu, Hao-Hsiang Chung, Han-Shen Huang: The Hybrid Poisson Aspect Model for Personalized Shopping Recommendation. ICDM 2003: 545-548

Chun-Nan Hsu, Chia-Hui Chang, Harianto Siek, Jiann-Jyh Lu, Jen-Jie Chiou: Reconfigurable Web Wrapper Agents for Web Information Integration. IIWeb 2003: 15-20

Jiann-Jyh Lu, Chun-Nan Hsu: Query Answering Using Ontologies in Agent-based Resource Sharing Environment for Biological Web Information Integrating. IIWeb 2003: 197-202

Dau-Cheng Lyu, Min-Siong Liang, Yuang-Chin Chiang, Chun-Nan Hsu, Ren-Yuan Lyu: Large vocabulary taiwanese (min-nan) speech recognition using tone features and statistical pronunciation modeling. INTERSPEECH 2003

Hung-Ju Huang, Chun-Nan Hsu: Bayesian classification for data from the same unknown class. IEEE Transactions on Systems, Man, and Cybernetics, Part B 32(2): 137-145 (2002)

Chun-Nan Hsu, Hung-Ju Huang, S. Dietrich: The ANNIGMA-wrapper approach to fast feature selection for neural nets. IEEE Transactions on Systems, Man, and Cybernetics, Part B 32(2): 207-212 (2002)

Hung-Ju Huang, Chun-Nan Hsu: Recognizing 100 Speakers Using Homologous Naive Bayes. PRICAI 2002: 395-403

Euna Jeong, Chun-Nan Hsu: Induction of Integrated View for XML Data with Heterogeneous DTDs. CIKM 2001: 151-158

Chun-Nan Hsu, Craig A. Knoblock: Semantic Query Optimization for Query Plans of Heterogeneous Multidatabase Systems. IEEE Trans. Knowl. Data Eng. 12(6): 959-978 (2000)

Euna Jeong, Chun-Nan Hsu: Ontology Integration in XML. AAAI/IAAI 2000: 1077

Euna Jeong, Chun-Nan Hsu: Ontology Integration in XML. AAAI 2000: 1105

Chun-Nan Hsu, Hung-Ju Huang, Tzu-Tsung Wong: Why Discretization Works for Naive Bayesian Classifiers. ICML 2000: 399-406

Chun-Nan Hsu, Craig A. Knoblock: Discovering Robust Knowledge from Databases that Change. Data Min. Knowl. Discov. 2(1): 69-95 (1998)

Chun-Nan Hsu, Ming-Tzung Dung: Generating Finite-State Transducers for Semi-Structured Data Extraction from the Web. Inf. Syst. 23(8): 521-538 (1998)

Chun-Nan Hsu, Craig A. Knoblock: Using Inductive Learning To Generate Rules for Semantic Query Optimization. Advances in Knowledge Discovery and Data Mining 1996: 425-445

Chun-Nan Hsu, Craig A. Knoblock: Discovering Robust Knowledge from Dynamic Closed World Data. AAAI/IAAI, Vol. 1 1996: 820-827

Chun-Nan Hsu, Craig A. Knoblock: Estimating the Robustness of Discovered Knowledge. KDD 1995: 156-161

Craig A. Knoblock, Yigal Arens, Chun-Nan Hsu: Cooperating Agents for Information Retrieval. CoopIS 1994: 122-133

Chun-Nan Hsu, Craig A. Knoblock: Rule Introduction for Semantic Query Optimization. ICML 1994: 112-120

Chun-Nan Hsu, Craig A. Knoblock: Rule Induction for Semantic Query Optimization. KDD Workshop 1994: 311-322

Yigal Arens, Chin Y. Chee, Chun-Nan Hsu, Craig A. Knoblock: Retrieving and Integrating Data from Multiple Information Sources. Int. J. Cooperative Inf. Syst. 2(2): 127-158 (1993)

Chun-Nan Hsu, Craig A. Knoblock: Reformulating Query Plans for Multidatabase Systems. CIKM 1993: 423-432