Thomas R. Ioerger

Michael A. DeJesus, Yanjia J. Zhang, Christopher M. Sassetti, Eric J. Rubin, James C. Sacchettini, Thomas R. Ioerger: Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries. Bioinformatics 29(6): 695-703 (2013)

Reetal Pai, James C. Sacchettini, Thomas R. Ioerger: Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features. BIOCOMP 2008: 666-673

Reetal Pai, James C. Sacchettini, Thomas R. Ioerger: Specificity Normalization for Identifying Selective Inhibitors in Virtual Screening. BIOCOMP 2008: 787-793

Kreshna Gopal, Erik McKee, Tod D. Romo, Reetal Pai, Jacob N. Smith, James C. Sacchettini, Thomas R. Ioerger: Crystallographic protein model-building on the web. Bioinformatics 23(3): 375-377 (2007)

Kreshna Gopal, James C. Sacchettini, Thomas R. Ioerger: Database Approaches and Data Representation in Structural Bioinformatics. BIBE 2007: 425-432

James Creel, Christopher Menzel, Thomas R. Ioerger: Intention Is Commitment with Expectation. FLAIRS Conference 2007: 50-55

Kreshna Gopal, Thomas R. Ioerger: Distance Metric Learning through Optimization of Ranking. ICDM Workshops 2007: 201-206

Kreshna Gopal, Tod D. Romo, Erik McKee, Reetal Pai, Jacob N. Smith, James C. Sacchettini, Thomas R. Ioerger: TEXTAL: Crystallographic Protein Model Building Using AI and Pattern Recognition. AI Magazine 27(3): 15-24 (2006)

Xiaocong Fan, John Yen, Michael S. Miller, Thomas R. Ioerger, Richard A. Volz: MALLET-A Multi-Agent Logic Language for Encoding Teamwork. IEEE Trans. Knowl. Data Eng. 18(1): 123-138 (2006)

Victor Palmer, Thomas R. Ioerger: Coalition Formation Meets Information Theory. FLAIRS Conference 2006: 98-99

Linli He, Thomas R. Ioerger: Combining bundle search with buyer coalition formation in electronic markets: A distributed approach through explicit negotiation. Electronic Commerce Research and Applications 4(4): 329-344 (2005)

Tod D. Romo, Kreshna Gopal, Erik McKee, Lalji Kanbi, Reetal Pai, Jacob N. Smith, James C. Sacchettini, Thomas R. Ioerger: TEXTAL: AI-Based Structural Determination for X-ray Protein Crystallography. IEEE Intelligent Systems 20(6): 59-63 (2005)

Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger: Determining Relevant Features to Recognize Electron Density Patterns in X-ray Protein Crystallography. J. Bioinformatics and Computational Biology 3(3): 645-676 (2005)

Kreshna Gopal, Tod D. Romo, Erik McKee, Kevin Childs, Lalji Kanbi, Reetal Pai, Jacob N. Smith, James C. Sacchettini, Thomas R. Ioerger: TEXTAL™: Automated Crystallographic Protein Structure Determination. AAAI 2005: 1483-1490

Yu Zhang, Richard A. Volz, Thomas R. Ioerger: Observation-based proactive communication in team cooperation. AAMAS 2005: 1321-1322

Sen Cao, Richard A. Volz, Thomas R. Ioerger, Michael S. Miller: On Proactive Helping Behaviors In Teamwork. IC-AI 2005: 974-980

Linli He, Thomas R. Ioerger: Forming resource-sharing coalitions: a distributed resource allocation mechanism for self-interested agents in computational grids. SAC 2005: 84-91

Yu Zhang, Thomas R. Ioerger, Richard A. Volz: Decision-theoretic proactive communication in multiagent teamwork. SMC 2005: 3903-3908

Linli He, Thomas R. Ioerger: Combining bundle search with buyer coalition formation in electronic markets: a distributed approach through explicit negotiation. ICEC 2004: 95-104

Linli He, Thomas R. Ioerger: Combining Bundle Search with Buyer Coalition Formation in Electronic Markets: A Distributed Approach through Negotiation. AAMAS 2004: 1440-1441

Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger: Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography. CSB 2004: 255-265

Thomas R. Ioerger: Reasoning about Beliefs, Observability, and Information Exchange in Teamwork. FLAIRS Conference 2004: 430-435

Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger: Evaluation of Geometric & Probabilistic Distance Measures To Retrieve Electron Density Patterns for Protein Structure Determination. IC-AI 2004: 427-432

Linli He, Thomas R. Ioerger: Task-Oriented Computational Economic-Based Distributed Resource Allocation Mechanisms for Computational Grids. IC-AI 2004: 462-468

Linli He, Thomas R. Ioerger: An Efficient Heuristic Bundle Search Algorithm for Buyers in Electronic Markets. IC-AI 2004: 729-735

Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger: Efficient retrieval of electron density patterns for modeling proteins by X-ray crystallography. ICMLA 2004: 380-387

Yu Zhang, Richard A. Volz, Thomas R. Ioerger, John Yen: A decision-theoretic approach for designing proactive communication in multi-agent teamwork. SAC 2004: 64-71

Dianxiang Xu, Richard A. Volz, Thomas R. Ioerger, John Yen: Modeling and Analyzing Multi-Agent Behaviors Using Predicate/Transition Nets. International Journal of Software Engineering and Knowledge Engineering 13(1): 103-124 (2003)

Dwi H. Widyantoro, Thomas R. Ioerger, John Yen: Tracking changes in user interests with a few relevance judgments. CIKM 2003: 548-551

Kreshna Gopal, Reetal Pai, Thomas R. Ioerger, Tod D. Romo, James C. Sacchettini: TEXTAL^TM: Artificial Intelligence Techniques for Automated Protein Structure Determination. IAAI 2003: 93-100

Dianxiang Xu, Michael S. Miller, Richard A. Volz, Thomas R. Ioerger: Collaborative Agents for C2 Teamwork Simulation. IC-AI 2003: 723-729

Linli He, Thomas R. Ioerger: A Quantitative Model of Capabilities in Multi-Agent Systems. IC-AI 2003: 730-736

R. Ganesh, Deborah A. Siegele, Thomas R. Ioerger: MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays. Pacific Symposium on Biocomputing 2003: 41-52

Yu Zhang, Richard A. Volz, Thomas R. Ioerger, Sen Cao, John Yen: Proactive Information Exchange During Team Cooperation. IC-AI 2002: 341-346

Dianxiang Xu, Richard A. Volz, Thomas R. Ioerger: Generating Parallel Based on Planning Graph Analysis of Predicate/Transition Nets. IC-AI 2002: 440-446

Sen Cao, Richard A. Volz, Thomas R. Ioerger, Yu Zhang: Role-Based and Agent-Oriental Teamwork Modeling. IC-AI 2002: 1190-

Dwi H. Widyantoro, Thomas R. Ioerger, John Yen: An Incremental Approach to Building a Cluster Hierarchy. ICDM 2002: 705-708

Yu Tao, Thomas R. Ioerger, James C. Sacchettini: Extracting Fractal Features for Analyzing Protein Structure. ICPR (2) 2002: 482-485

Dianxiang Xu, Richard A. Volz, Thomas R. Ioerger, John Yen: Modeling and verifying multi-agent behaviors using predicate/transition nets. SEKE 2002: 193-200

Keith E. Biggers, Thomas R. Ioerger: Automatic Generation of Communication and Teamwork within Multi-Agent Teams. Applied Artificial Intelligence 15(10): 875-916 (2001)

Dwi H. Widyantoro, Thomas R. Ioerger, John Yen: Learning user interest dynamics with a three-descriptor representation. JASIST 52(3): 212-225 (2001)

J. Colby Johnson, Thomas R. Ioerger: A formal model of responsibilities in agent-based teams. Agents 2001: 157-158

Yu Tao, Thomas R. Ioerger, Yuan Yan Tang: Extraction of rotation invariant signature based on fractal geometry. ICIP (1) 2001: 1090-1093

John Yen, Jianwen Yin, Thomas R. Ioerger, Michael S. Miller, Dianxiang Xu, Richard A. Volz: CAST: Collaborative Agents for Simulating Teamwork. IJCAI 2001: 1135-1144

Magy Seif El-Nasr, John Yen, Thomas R. Ioerger: FLAME-Fuzzy Logic Adaptive Model of Emotions. Autonomous Agents and Multi-Agent Systems 3(3): 219-257 (2000)

Kreshna Gopal, Thomas R. Ioerger: An Adaptive Planner Based on Learning of Planning Performance. AAAI/IAAI 2000: 1073

Jianwen Yin, Michael S. Miller, Thomas R. Ioerger, John Yen, Richard A. Volz: A knowledge-based approach for designing intelligent team training systems. Agents 2000: 427-434

Michael S. Miller, Jianwen Yin, Richard A. Volz, Thomas R. Ioerger, John Yen: Training Teams with Collaborative Agents. Intelligent Tutoring Systems 2000: 63-72

Thomas R. Ioerger: Detecting Feature Interactions from Accuracies of Random Feature Subsets. AAAI/IAAI 1999: 350-357

Magy Seif El-Nasr, Thomas R. Ioerger, John Yen: PETEEI: A PET With Evolving Emotional Intelligence. Agents 1999: 9-15

Magy Seif El-Nasr, Thomas R. Ioerger, John Yen, Donald H. House, Frederic I. Parke: Emotionally Expressive Agents. CA 1999: 48-57

Dwi H. Widyantoro, Thomas R. Ioerger, John Yen: An Adaptive Algorithm for Learning Changes in User Interests. CIKM 1999: 405-412

Thomas R. Ioerger, Thomas Holton, Jon A. Christopher, James C. Sacchettini: TEXTAL: A Pattern Recognition System for Interpreting Electron Density Maps. ISMB 1999: 130-137

Thomas R. Ioerger: Integrating a Spatial Reasoner with a Resolution Theorem-Prover. AAAI/IAAI 1997: 145-152

Thomas R. Ioerger: The Context-Dependence of Amino Acid Properties. ISMB 1997: 157-166

Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam: Searching for Representations to Improve Protein Sequence Fold-Class Prediction. Machine Learning 21(1-2): 151-175 (1995)

Thomas R. Ioerger: The Manipulation of Images to Handle Indeterminacy in Spatial Reasoning. Cognitive Science 18(4): 551-593 (1994)

Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam: Constructive Induction and Protein Tertiary Structure Prediction. ISMB 1993: 198-206