Dusanka Janezic

Janez Konc, Matjaz Depolli, Roman Trobec, Kati Rozman, Dusanka Janezic: Parallel-ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites. Journal of Computational Chemistry 33(27): 2199-2203 (2012)

Janez Konc, Dusanka Janezic: ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins. Nucleic Acids Research 40(Web-Server-Issue): 214-221 (2012)

Urban Borstnik, Benjamin T. Miller, Bernard R. Brooks, Dusanka Janezic: The distributed diagonal force decomposition method for parallelizing molecular dynamics simulations. Journal of Computational Chemistry 32(14): 3005-3013 (2011)

Janez Konc, Dusanka Janezic: ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment. Bioinformatics 26(9): 1160-1168 (2010)

Janez Konc, Dusanka Janezic: ProBiS: a web server for detection of structurally similar protein binding sites. Nucleic Acids Research 38(Web-Server-Issue): 436-440 (2010)

Dusanka Janezic, Ante Milicevic, Sonja Nikolic, Nenad Trinajstic: Topological Complexity of Molecules. Encyclopedia of Complexity and Systems Science 2009: 9210-9224

Matej Praprotnik, Stanko Hocevar, Milan Hodoscek, Matej Penca, Dusanka Janezic: New all-atom force field for molecular dynamics simulation of an AlPO₄-34 molecular sieve. Journal of Computational Chemistry 29(1): 122-129 (2008)

Janez Konc, Dusanka Janezic: A Branch and Bound Algorithm for Matching Protein Structures. ICANNGA (2) 2007: 399-406

Franci Merzel, Milan Hodoscek, Dusanka Janezic, Alain Sanson: New force field for calcium binding sites in annexin-membrane complexes. Journal of Computational Chemistry 27(4): 446-452 (2006)

Mircea V. Diudea, Csaba L. Nagy, Ioan Silaghi-Dumitrescu, Ante Graovac, Dusanka Janezic, Drazen Vikic-Topic: Periodic Cages. Journal of Chemical Information and Modeling 45(2): 293-299 (2005)

Dusanka Janezic: The Regional Biophysics Meeting March 16-20, 2005, Zrece, Slovenia. Journal of Chemical Information and Modeling 45(6): 1481 (2005)

Matej Praprotnik, Dusanka Janezic: Molecular Dynamics Integration Meets Standard Theory of Molecular Vibrations. Journal of Chemical Information and Modeling 45(6): 1571-1579 (2005)

Urban Borstnik, Dusanka Janezic: Symplectic Molecular Dynamics Simulations on Specially Designed Parallel Computers. Journal of Chemical Information and Modeling 45(6): 1600-1604 (2005)

Dusanka Janezic, Ante Graovac: The Eighteenth International Course & Conference on the Interfaces among Mathematics, Chemistry & Computer Sciences June 23-28, 2003 Dubrovnik, Croatia. Journal of Chemical Information and Modeling 44(2): 289 (2004)

Urban Borstnik, Milan Hodoscek, Dusanka Janezic: Improving the Performance of Molecular Dynamics Simulations on Parallel Clusters. Journal of Chemical Information and Modeling 44(2): 359-364 (2004)

István Lukovits, Dusanka Janezic: Enumeration of Conjugated Circuits in Nanotubes. Journal of Chemical Information and Modeling 44(2): 410-414 (2004)

Urban Borstnik, Dusanka Janezic: Reviews in Computational Chemistry. Volume 19 Edited by Kenny B. Lipkowitz, Raima Larter, and Thomas R. Cundari. Wiley-VCH 2003, ISBN 0-471-23585-7. Journal of Chemical Information and Modeling 44(4): 1515 (2004)

Dusanka Janezic, Matej Praprotnik: Molecular Dynamics Integration Time Step Dependence of the Split Integration Symplectic Method on System Density. Journal of Chemical Information and Computer Sciences 43(6): 1922-1927 (2003)

Dusanka Janezic, Franci Merzel: Split Integration Symplectic Method for Molecular Dynamics Integration. Journal of Chemical Information and Computer Sciences 37(6): 1048-1054 (1997)

Roman Trobec, Franci Merzel, Dusanka Janezic: The Complexity of Parallel Symplectic Molecular Dynamics Algorithms. Journal of Chemical Information and Computer Sciences 37(6): 1055-1062 (1997)

Roman Trobec, Franci Merzel, Dusanka Janezic: Computational Complexity of Split Symplectic MD Integration Method. PARCO 1997: 541-548

Bernard R. Brooks, Dusanka Janezic, Martin Karplus: Harmonic Analysis of Large Systems. I. Methodology. Journal of Computational Chemistry 16(12): 1522-1542 (1995)

Dusanka Janezic, Martin Karplus: Harmonic Analysis of Large Systems. II. Comaprison of Different Protein Models. Journal of Computational Chemistry 16(12): 1543-1553 (1995)

Dusanka Janezic, Richard M. Venable, Martin Karplus: Harmonic Analysis of Large Systems. III. Comparison with Molecular Dynamics. Journal of Computational Chemistry 16(12): 1554-1568 (1995)

Roman Trobec, Dusanka Janezic: Comparison of Parallel Verlet and Implicit Runge-Kutta Methods for Molecular Dynamics Integration. Journal of Chemical Information and Computer Sciences 35(1): 100-105 (1995)

Dusanka Janezic, Franci Merzel: An Efficient Symplectic Integration Algorithm for Molecular Dynamics Simulations. Journal of Chemical Information and Computer Sciences 35(2): 321-326 (1995)

Dusanka Janezic, Roman Trobec: Parallelization of an Implicit Runge-Kutta Method for Molecular Dynamics Integration. Journal of Chemical Information and Computer Sciences 34(3): 641-646 (1994)

Dusanka Janezic, Bojan Orel: Implicit Runge-Kutta method for molecular dynamics integration. Journal of Chemical Information and Computer Sciences 33(2): 252-257 (1993)

Roman Trobec, Izidor Jerebic, Dusanka Janezic: Parallel Algorithm for Molecular Dynamics Integration. Parallel Computing 19(9): 1029-1039 (1993)

Dusanka Janezic, Matej Penca, B. B. Lide, David R. Lide: Graphical handling of wide-ranging data: graphing of photon cross-section data. Journal of Chemical Information and Computer Sciences 30(1): 30-32 (1990)