Mark Jenkinson

Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, Michael Brady, Julia A. Schnabel: MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration. Medical Image Analysis 16(7): 1423-1435 (2012)

Yazhuo Kong, Mark Jenkinson, Jesper Andersson, Irene Tracey, Jonathan C. W. Brooks: Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage 60(2): 1538-1549 (2012)

V. Popescu, M. Battaglini, W. S. Hoogstrate, S. C. J. Verfaillie, I. C. Sluimer, R. A. van Schijndel, B. W. van Dijk, K. S. Cover, D. L. Knol, Mark Jenkinson, Frederik Barkhof, Nicola De Stefano, Hugo Vrenken: Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis. NeuroImage 61(4): 1484-1494 (2012)

Mark Jenkinson, Christian F. Beckmann, Timothy Edward John Behrens, Mark William Woolrich, Stephen M. Smith: FSL. NeuroImage 62(2): 782-790 (2012)

Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel: Textural mutual information based on cluster trees for multimodal deformable registration. ISBI 2012: 1471-1474

Mattias P. Heinrich, Mark Jenkinson, Michael Brady, Julia A. Schnabel: Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling. MICCAI (3) 2012: 115-122

Andri C. Tziortzi, Graham E. Searle, Sofia Tzimopoulou, Cristian A. Salinas, John D. Beaver, Mark Jenkinson, Marc Laruelle, Eugenii A. Rabiner, Roger N. Gunn: Imaging dopamine receptors in humans with [¹¹C]-(+)-PHNO: Dissection of D3 signal and anatomy. NeuroImage 54(1): 264-277 (2011)

Courtney A. Bishop, Mark Jenkinson, Jesper Andersson, Jérôme Declerck, Dorit Merhof: Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. NeuroImage 55(3): 1009-1019 (2011)

Brian Patenaude, Stephen M. Smith, David N. Kennedy, Mark Jenkinson: A Bayesian model of shape and appearance for subcortical brain segmentation. NeuroImage 56(3): 907-922 (2011)

Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab: Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner. NeuroImage 57(1): 167-181 (2011)

Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim: Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Med. Imaging 30(11): 1901-1920 (2011)

Manav Bhushan, Julia A. Schnabel, Laurent Risser, Mattias P. Heinrich, J. Michael Brady, Mark Jenkinson: Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer. MICCAI (1) 2011: 476-483

Mattias P. Heinrich, Mark Jenkinson, Manav Bhushan, Tahreema N. Matin, Fergus Gleeson, J. Michael Brady, Julia A. Schnabel: Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration. MICCAI (2) 2011: 541-548

Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson: Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease. NeuroImage 49(1): 1-8 (2010)

Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson: Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8]. NeuroImage 51(2): 940 (2010)

Courtney A. Bishop, Mark Jenkinson, Jérôme Declerck, Dorit Merhof: Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects. VCBM 2010: 17-24

Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey: Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009)

Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert: An evaluation of four automatic methods of segmenting the subcortical structures in the brain. NeuroImage 47(4): 1435-1447 (2009)

Aleksandar Petrovic, Stephen M. Smith, Ricarda A. Menke, Mark Jenkinson: Methods for Tractography-Driven Surface Registration of Brain Structures. MICCAI (1) 2009: 705-712

Clare Poynton, Mark Jenkinson, William M. Wells III: Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data. MICCAI (1) 2009: 951-959

Clare Poynton, Mark Jenkinson, Stephen Whalen, Alexandra Golby, William M. Wells III: Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging. MICCAI (2) 2008: 271-279

Kolawole O. Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert: Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI. MICCAI (1) 2008: 409-416

Peter R. Bannister, J. Michael Brady, Mark Jenkinson: Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images. Image Vision Comput. 25(3): 311-320 (2007)

Lilla Zöllei, Mark Jenkinson, Samson J. Timoner, William M. Wells III: A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration. IPMI 2007: 662-674

Kolawole O. Babalola, Timothy F. Cootes, Brian Patenaude, Anil Rao, Mark Jenkinson: Comparing the Similarity of Statistical Shape Models Using the Bhattacharya Metric. MICCAI (1) 2006: 142-150

Brian Patenaude, Stephen M. Smith, Mark Jenkinson: A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures. WBIR 2006: 9-17

William R. Crum, Oscar Camara, Daniel Rueckert, Kanwal K. Bhatia, Mark Jenkinson, Derek L. G. Hill: Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation. MICCAI 2005: 99-106

Mark William Woolrich, Mark Jenkinson, J. Michael Brady, Stephen M. Smith: Fully Bayesian spatio-temporal modeling of FMRI data. IEEE Trans. Med. Imaging 23(2): 213-231 (2004)

Peter R. Bannister, Michael Brady, Mark Jenkinson: TIGER - A New Model for Spatio-temporal Realignment of FMRI Data. ECCV Workshops CVAMIA and MMBIA 2004: 292-303

Luis Freire, Jeff Orchard, Mark Jenkinson, Jean-Francois Mangin: Reducing Activation-Related Bias in FMRI Registration. MIAR 2004: 278-285

William R. Crum, Daniel Rueckert, Mark Jenkinson, David N. Kennedy, Stephen M. Smith: A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging. MICCAI (1) 2004: 679-686

Luis Freire, Mark Jenkinson: A Gradient-Informed Robust Motion Correction Method for FMRI. WBIR 2003: 377-386

Mark Jenkinson, Michael Brady: A saliency-based hierarchy for local symmetries. Image Vision Comput. 20(2): 85-101 (2002)

Mark Jenkinson, Stephen M. Smith: A global optimisation method for robust affine registration of brain images. Medical Image Analysis 5(2): 143-156 (2001)

Stephen M. Smith, Mark Jenkinson: Accurate Robust Symmetry Estimation. MICCAI 1999: 308-317

Mark Jenkinson, Michael Brady: Feature Saliency from Noise Variations in Invariants. ACCV (2) 1998: 41-48