Raja Jothi

Sailu Yellaboina, Asba Tasneem, Dmitri V. Zaykin, Balaji Raghavachari, Raja Jothi: DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic Acids Research 39(Database-Issue): 730-735 (2011)

Mei Liu, Xue-wen Chen, Raja Jothi: Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks. Bioinformatics 25(19): 2492-2499 (2009)

Raja Jothi, Balaji Raghavachari: Degree-bounded minimum spanning trees. Discrete Applied Mathematics 157(5): 960-970 (2009)

Raja Jothi, Balaji Raghavachari: Improved approximation algorithms for the single-sink buy-at-bulk network design problems. J. Discrete Algorithms 7(2): 249-255 (2009)

Balaji Raghavachari, Asba Tasneem, Teresa M. Przytycka, Raja Jothi: DOMINE: a database of protein domain interactions. Nucleic Acids Research 36(Database-Issue): 656-661 (2008)

Raja Jothi, Teresa M. Przytycka, L. Aravind: Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. BMC Bioinformatics 8 (2007)

Raja Jothi, Balaji Raghavachari: Approximating the k-traveling repairman problem with repairtimes. J. Discrete Algorithms 5(2): 293-303 (2007)

Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka: Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations. Algorithms for Molecular Biology 1 (2006)

Raja Jothi, Elena Zotenko, Asba Tasneem, Teresa M. Przytycka: COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations. Bioinformatics 22(7): 779-788 (2006)

Chao Gong, Kamil Saraç, Ovidiu Daescu, Balaji Raghavachari, Raja Jothi: Load-balanced agent activation for value-added network services. Computer Communications 29(11): 1905-1916 (2006)

Raja Jothi, Balaji Raghavachari: Approximation algorithms for the capacitated minimum spanning tree problem and its variants in network design. ACM Transactions on Algorithms 1(2): 265-282 (2005)

Raja Jothi, Maricel G. Kann, Teresa M. Przytycka: Predicting protein-protein interaction by searching evolutionary tree automorphism space. ISMB (Supplement of Bioinformatics) 2005: 241-250

Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka: Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. Systems Biology and Regulatory Genomics 2005: 23-38

Raja Jothi, Balaji Raghavachari: Survivable network design: the capacitated minimum spanning network problem. Inf. Process. Lett. 91(4): 183-190 (2004)

Raja Jothi, Balaji Raghavachari: Degree-bounded minimum spanning trees. CCCG 2004: 192-195

Chao Gong, Ovidiu Daescu, Raja Jothi, Balaji Raghavachari, Kamil Saraç: Load balancing for reliable multicast. Communications, Internet, and Information Technology 2004: 86-91

Raja Jothi, Balaji Raghavachari: Approximation Algorithms for the Capacitated Minimum Spanning Tree Problem and Its Variants in Network Design. ICALP 2004: 805-818

Vinod Vokkarane, Jianping Wang, Xiangtong Qi, Raja Jothi, Balaji Raghavachari, Jason P. Jue: Dynamic dual-homing protection in WDM mesh networks. ICC 2004: 1644-1648

Raja Jothi, Balaji Raghavachari: Minimum Latency Tours and the k-Traveling Repairmen Problem. LATIN 2004: 423-433

Ovidiu Daescu, Raja Jothi, Balaji Raghavachari, Kamil Saraç: Optimal placement of NAK-suppressing agents for reliable multicast: a partial deployment case. SAC 2004: 334-338

Raja Jothi, Balaji Raghavachari: Improved Approximation Algorithms for the Single-Sink Buy-at-Bulk Network Design Problems. SWAT 2004: 336-348

Raja Jothi, Balaji Raghavachari, Subramanian Varadarajan: A 5/4-approximation algorithm for minimum 2-edge-connectivity. SODA 2003: 725-734