Cheng-Yan Kao

Hsueh-Ting Chu, William W. L. Hsiao, Jen-Chih Chen, Tze-Jung Yeh, Mong-Hsun Tsai, Han Lin, Yen-Wenn Liu, Sheng-An Lee, Chaur-Chin Chen, Theresa Tsao, Cheng-Yan Kao: EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. Bioinformatics 29(8): 1004-1010 (2013)

Chien-Hao Su, Tse-Yi Wang, Ming-Tsung Hsu, Francis Cheng-Hsuan Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai: The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes. IEEE/ACM Trans. Comput. Biology Bioinform. 9(2): 619-628 (2012)

Chia-Ping Shen, Chia-Hung Liu, Feng-Sheng Lin, Han Lin, Chi-Ying F. Huang, Cheng-Yan Kao, Feipei Lai, Jeng-Wei Lin: A Multiclass Classification Tool Using Cloud Computing Architecture. ASONAM 2012: 765-770

Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Sufeng Chiang, Jen-Hao Cheng, Francis C. Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai: MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering. Bioinformatics 27(16): 2298-2299 (2011)

Chien-Hsiang Hsu, Tse-Yi Wang, Hsueh-Ting Chu, Cheng-Yan Kao, Kuang-Chi Chen: A quantitative analysis of monochromaticity in genetic interaction networks. BMC Bioinformatics 12(S-13): S16 (2011)

Sheng-An Lee, Theresa Tsao, Ko-Chun Yang, Han Lin, Yu-Lun Kuo, Chien-Hsiang Hsu, Wen-Kuei Lee, Kuo-Chuan Huang, Cheng-Yan Kao: Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression. BMC Bioinformatics 12(S-13): S20 (2011)

Sheng-An Lee, Chen-hsiung Chan, Tzu-Chi Chen, Chia-Ying Yang, Kuo-Chuan Huang, Chi-Hung Tsai, Jin-Mei Lai, Feng-Sheng Wang, Cheng-Yan Kao, Chi-Ying F. Huang: POINeT: protein interactome with sub-network analysis and hub prioritization. BMC Bioinformatics 10 (2009)

Un-Gian Iunn, Jia-hung Tai, Kiat-Gak Lau, Cheng-Yan Kao, Keh-Jiann Chen: Modeling Taiwanese POS Tagging Using Statistical Methods and Mandarin Training Data. IJCLCLP 14(3) (2009)

Tse-Yi Wang, Kuang-Chi Chen, D. Frank Hsu, Cheng-Yan Kao: Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. BIBE 2009: 405-409

Sheng-An Lee, Chen-hsiung Chan, Chi-Hung Tsai, Jin-Mei Lai, Feng-Sheng Wang, Cheng-Yan Kao, Chi-Ying F. Huang: Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. BMC Bioinformatics 9(S-12) (2008)

Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Yuh-Jyh Hu, Jinn-Moon Yang: Evolutionary conservation of DNA-contact residues in DNA-binding domains. BMC Bioinformatics 9(S-6) (2008)

Un-Gian Iunn, Chia-Hung Tai, Kiat-Gak Lau, Keh-Jiann Chen, Cheng-Yan Kao: 利用統計方法及中文訓練資料處理台語文詞性標記 (Modeling Taiwanese POS tagging with statistical methods and Mandarin training data) [In Chinese]. ROCLING 2008

Chun-Nan Hsu, Jin-Mei Lai, Chia-Hung Liu, Huei-Hun Tseng, Chih-Yun Lin, Kuan-Ting Lin, Hsu-Hua Yeh, Ting-Yi Sung, Wen-Lian Hsu, Li-Jen Su, Sheng-An Lee, Chang-Han Chen, Gen-Cher Lee, D. T. Lee, Yow-Ling Shiue, Chang-Wei Yeh, Chao-Hui Chang, Cheng-Yan Kao, Chi-Ying F. Huang: Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). BMC Bioinformatics 8 (2007)

Tao-Wei Huang, Chung-Yen Lin, Cheng-Yan Kao: Reconstruction of human protein interolog network using evolutionary conserved network. BMC Bioinformatics 8 (2007)

Un-Gian Iunn, Kiat-Gak Lau, Hong-Giau Tan-Tenn, Sheng-An Lee, Cheng-Yan Kao: Modeling Taiwanese Southern-Min Tone Sandhi Using Rule-Based Methods. IJCLCLP 12(4) (2007)

Chia-Hung Chang, Yu-Chung Chang, Anthony Underwood, Chien-Shun Chiou, Cheng-Yan Kao: VNTRDB: a bacterial variable number tandem repeat locus database. Nucleic Acids Research 35(Database-Issue): 416-421 (2007)

Chi-Way Wang, Lei-Ming Sun, Ming-Hui Jin, Chung-Jung Fu, Li Liu, Chen-hsiung Chan, Cheng-Yan Kao: A genetic algorithm for resident physician scheduling problem. GECCO 2007: 2203-2210

Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Jinn-Moon Yang: Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains. IMSCCS 2007: 9-16

Tzu-Hsiang Chou, Ming-Hui Jin, Chi-Chung Chen, Cheng-Yan Kao: Positioning System in Taipei Children's Museum of Transportation and Communication. ISPA Workshops 2007: 77-86

Tu-Bin Chu, Ming-Hui Jin, Li-Xin Xu, Jong-Tsong Chiang, Cheng-Yan Kao: Portable Patient Information Integration System for Patient Safety Improvement. ISPA Workshops 2007: 87-95

Ming-Hui Jin, D. Frank Hsu, Cheng-Yan Kao: Compact Genetic Algorithm for Performance Improvement in Hierarchical Sensor Networks Management. Journal of Interconnection Networks 7(1): 101-116 (2006)

Chaur-Chin Chen, Cheng-Yan Kao, Chun-Fan Chang, Hsueh-Ting Chu, Chiung-Nien Chen: Simple Software for Microarray Image Analysis. CRV 2006: 46

Pei-Ying Huang, Tzung-Pei Hong, Cheng-Yan Kao: Combining Single-pass and Multiple-pass Heuristics for Group Flexible Flow-shop Scheduling Problems. SMC 2006: 3901-3906

East Zhao, Hsuan-Liang Liu, Chi-Hung Tsai, Huai-Kuang Tsai, Chen-hsiung Chan, Cheng-Yan Kao: Cysteine separations profiles on protein sequences infer disulfide connectivity. Bioinformatics 21(8): 1415-1420 (2005)

Kuang-Chi Chen, Tse-Yi Wang, Huei-Hun Tseng, Chi-Ying F. Huang, Cheng-Yan Kao: A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae. Bioinformatics 21(12): 2883-2890 (2005)

Yu-Cheng Huang, Chun-Fan Chang, Chen-hsiung Chan, Tze-Jung Yeh, Ya-Chun Chang, Chaur-Chin Chen, Cheng-Yan Kao: Integrated minimum-set primers and unique probe design algorithms for differential detection on symptom-related pathogens. Bioinformatics 21(24): 4330-4337 (2005)

Chi-Hung Tsai, Bo-Juen Chen, Chen-hsiung Chan, Hsuan-Liang Liu, Cheng-Yan Kao: Improving disulfide connectivity prediction with sequential distance between oxidized cysteines. Bioinformatics 21(24): 4416-4419 (2005)

Yen-Chih Chen, Jinn-Moon Yang, Chi-Hung Tsai, Cheng-Yan Kao: GEMPLS: A New QSAR Method Combining Generic Evolutionary Method and Partial Least Squares. EvoWorkshops 2005: 125-135

Chen-hsiung Chan, Sheng-An Lee, Cheng-Yan Kao, Huai-Kuang Tsai: Improving EAX with restricted 2-opt. GECCO 2005: 1471-1476

Ming-Hui Jin, Cheng-Yan Kao, Yu-Cheng Huang, D. Frank Hsu, Ren-Guey Lee, Chih-Kung Lee: Compact genetic algorithm for active interval scheduling in hierarchical sensor networks. GECCO 2005: 2205-2206

Ming-Hui Jin, Ren-Guey Lee, Cheng-Yan Kao, You-Rui Wu, D. Frank Hsu, Tse-Ping Dong, Kuan-Tsae Huang: Sensor Network Design and Implementation for Health Telecare and Diagnosis Assistance Applications. ICPADS (2) 2005: 407-411

Ming-Hui Jin, Win-Zing Li, D. Frank Hsu, Cheng-Yan Kao: Compact Genetic Algorithm for Performance Improvement in Hierarchical Sensor Networks Management. ISPAN 2005: 406-413

Un-Gian Iunn, Sheng-an Li, Kiat-Gak Lau, Cheng-Yan Kao: 台語變調系統實作研究 (A Study on Implementation of Taiwanese Tone Sandhi System) [In Chinese]. ROCLING 2005

Tao-Wei Huang, An-Chi Tien, Wen-Shien Huang, Yuan-Chii G. Lee, Chin-Lin Peng, Huei-Hun Tseng, Cheng-Yan Kao, Chi-Ying F. Huang: POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics 20(17): 3273-3276 (2004)

Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao: Some issues of designing genetic algorithms for traveling salesman problems. Soft Comput. 8(10): 689-697 (2004)

Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao: An Evolutionary Approach for Gene Expression Patterns. IEEE Transactions on Information Technology in Biomedicine 8(2): 69-78 (2004)

Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fang Tsai, Cheng-Yan Kao: An evolutionary algorithm for large traveling salesman problems. IEEE Transactions on Systems, Man, and Cybernetics, Part B 34(4): 1718-1729 (2004)

Han-Yu Chuang, Hongfang Liu, Stuart M. Brown, Cameron McMunn-Coffran, Cheng-Yan Kao, D. Frank Hsu: Identifying Significant Genes from Microarray Data. BIBE 2004: 358-365

Chia-Hung Chang, Han-Yu Chuang, Yi-Hung Chiang, Chien-Shun Chiou, Hsueh-I Lu, Cheng-Yan Kao: Automatically Predicting Possible Loci of Variable Number of Tandem Repeats. BIBE 2004: 475-482

Yen-Chih Chen, Jinn-Moon Yang, Chi-Hung Tsai, Cheng-Yan Kao: Comparative Molecular Binding Energy Analysis of HIV-1 Protease Inhibitors Using Genetic Algorithm-Based Partial Least Squares Method. GECCO (2) 2004: 385-386

Han-Yu Chuang, Huai-Kuang Tsai, Cheng-Yan Kao: Optimal Designs for Microarray Experiments. ISPAN 2004: 619-624

Han-Yu Chuang, Hongfang Liu, Fang-An Chen, Cheng-Yan Kao, D. Frank Hsu: Combination Methods in Microarray Analysis. ISPAN 2004: 625-630

Hua-Sheng Chiu, Han-Yu Chuang, Huai-Kuang Tsai, Tao-Wei Huang, Cheng-Yan Kao: Discovering Statistically Significant Clusters by Using Iterative Genetic Algorithms in Gene Expression Data. METMBS 2004: 243-249

Chia-Wen Chang, Mao-Yen Chen, Wen-Chang Chang, Cheng-Yan Kao: Exploring of Radiation Resistance from Bacterium Deinococcus radiodurans R1 by Amino Acid Compositions of Proteins: View from Comparative Whole Protein Sequences. METMBS 2004: 314-321

Chi-Hung Tsai, Huai-Kuang Tsai, Shih-Chieh Chen, Cheng-Yan Kao: Disulfide Connectivity Prediction Using Support Vector Machine and Novel Features. METMBS 2004: 391-395

Yu-Cheng Huang, Yu-Chih Chao, Shwu-Bin Lin, Huai-Kuang Tsai, Chun-Fan Chang, Sheng-An Lee, Cheng-Yan Kao: A Tool to Determine the Specificity of Antisense Oligonucleotide. METMBS 2004: 447-449

Yu-Cheng Huang, Han-Yu Chuang, Huai-Kuang Tsai, Chun-Fan Chang, Cheng-Yan Kao: Designing Multiple-Use Primer Set for Multiplex PCR by Using Compact GAs. PPSN 2004: 511-521

Han-Yu Chuang, Huai-Kuang Tsai, Yuan-Fan Tsai, Cheng-Yan Kao: Ranking Genes for Discriminability on Microarray Data. J. Inf. Sci. Eng. 19(6): 953-966 (2003)

Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng: A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. BIBE 2003: 297-304

Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao: Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data. GECCO 2002: 610-617

Jinn-Moon Yang, Jorng-Tzong Horng, Chih-Jen Lin, Cheng-Yan Kao: Optical Coating Designs Using the Family Competition Evolutionary Algorithm. Evolutionary Computation 9(4): 421-443 (2001)

Jorng-Tzong Horng, Ying-Ping Chen, Cheng-Yan Kao: A Theoetical Aspect of a Stochastic Sketching Method for Global Optimization. J. Inf. Sci. Eng. 17(1): 47-71 (2001)

Jinn-Moon Yang, Cheng-Yan Kao: A Robust Evolutionary Algorithm for Training Neural Networks. Neural Computing and Applications 10(3): 214-230 (2001)

Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao: Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. BIBE 2001: 104-111

Jorng-Tzong Horng, Hsien-Da Huang, Cho-Chun Huang, Cheng-Yan Kao: Mining Putative Regulatory Elements in Gene Promoter Regions. German Conference on Bioinformatics 2001: 90-95

Jorng-Tzong Horng, Ching-Mei Lin, Bing-He Yang, Cheng-Yan Kao: A Genetic Algorithm for Multiple Sequence Alignment. German Conference on Bioinformatics 2001: 167-170

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A Genetic Algorithm with Adaptive Mutations and Family Competition for Training Neural Networks. Int. J. Neural Syst. 10(5): 333-352 (2000)

Jinn-Moon Yang, Cheng-Yan Kao: Flexible ligand docking using a robust evolutionary algorithm. Journal of Computational Chemistry 21(11): 988 (2000)

Jinn-Moon Yang, Cheng-Yan Kao: Integrating adaptive mutations and family competition into genetic algorithms as function optimizer. Soft Comput. 4(2): 89-102 (2000)

Jinn-Moon Yang, Cheng-Yan Kao: A family competition evolutionary algorithm for automated docking of flexible ligands to proteins. IEEE Transactions on Information Technology in Biomedicine 4(3): 225-237 (2000)

Huai-Kuang Tsai, Cheng-Yan Kao, Jinn-Moon Yang: A Genetic Algorithm for Physical Mapping Problems. GECCO 2000: 375

Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu, Cheng-Yan Kao: Materialized View Selection in a Data Warehouse Using Evolutionary Algorithms. GECCO 2000: 385

Jorng-Tzong Horng, Ching-Mei Lin, Baw-Jhiune Liu, Cheng-Yan Kao: Using Genetic Algorithms to Solve Multiple Sequence Alignments. GECCO 2000: 883-

Jinn-Moon Yang, Cheng-Yan Kao: An Evolutionary Algorithms to Training Neural Networks for a Two-Spiral Problem. GECCO 2000: 1025-1032

Ying-Ping Chen, Jorng-Tzong Horng, Cheng-Yan Kao: Stochastic sketching: a new method for global optimization. Soft Comput. 3(2): 101-110 (1999)

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A New Evolutionary Approach to Developing Neural Autonomous Agents. ICRA 1998: 1411-1416

Jinn-Moon Yang, Cheng-Yan Kao: An Evolutionary Algorithm for Synthesizing Optical Thin-Film Designs. PPSN 1998: 947-958

Jinn-Moon Yang, Ying-Ping Chen, Jorng-Tzong Horng, Cheng-Yan Kao: Applying Family Competition to Evolution Strategies for Constrained Optimization. Evolutionary Programming 1997: 201-211

Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao: A Continuous Genetic Algorithm for Global Optimization. ICGA 1997: 230-237

Jinn-Moon Yang, Cheng-Yan Kao: A Combined Evolutionary Algorithm for Real Parameters Optimization. International Conference on Evolutionary Computation 1996: 732-737

Jorng-Tzong Horng, Baw-Jhiune Liu, Cheng-Yan Kao: A Genetic Algorithm for Database Query Optimization. International Conference on Evolutionary Computation 1994: 350-355

Wen-Chih Huang, Cheng-Yan Kao, Jorng-Tzong Horng: A Genetic Algorithm Approach for Set Covering Problems. International Conference on Evolutionary Computation 1994: 569-574

Leuo-hong Wang, Cheng-Yan Kao, Ming Ouhyoung, Wen-Chin Chen: Using an Annealing Genetic Algorihtm to Solve Global Energy Minimazation Problem. ICTAI 1994: 404-410

Feng-Tse Lin, Cheng-Yan Kao, Ching-Chi Hsu: Applying the genetic approach to simulated annealing in solving some NP-hard problems. IEEE Transactions on Systems, Man, and Cybernetics 23(6): 1752-1767 (1993)