Emre Karakoç

Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li: Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinformatics and Computational Biology 9(1): 15-41 (2011)

Babak Alipanahi, Xin Gao, Emre Karakoç, Logan Donaldson, Ming Li: PICKY: a novel SVD-based NMR spectra peak picking method. Bioinformatics 25(12) (2009)

Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp: taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Research 35(Web-Server-Issue): 325-329 (2007)

Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp: Novel approaches for small biomolecule classification and structural similarity search. SIGKDD Explorations 9(1): 14-21 (2007)

Emre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov: Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. Pacific Symposium on Biocomputing 2007: 133-144

Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang: RNA-RNA Interaction Prediction and Antisense RNA Target Search. Journal of Computational Biology 13(2): 267-282 (2006)

Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp: Distance based algorithms for small biomolecule classification and structural similarity search. ISMB (Supplement of Bioinformatics) 2006: 243-251

Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler: RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB 2006: 130-142

Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang: RNA-RNA Interaction Prediction and Antisense RNA Target Search. RECOMB 2005: 152-171

Emre Karakoç, Z. Meral Özsoyoglu, Süleyman Cenk Sahinalp, Murat Tasan, Xiang Zhang: Novel Approaches to Biomolecular Sequence Indexing. IEEE Data Eng. Bull. 27(3): 40-47 (2004)