Peter M. Kasson

Sander Pronk, Szilárd Páll, Roland Schulz, Per Larsson, Pär Bjelkmar, Rossen Apostolov, Michael R. Shirts, Jeremy C. Smith, Peter M. Kasson, David van der Spoel, Berk Hess, Erik Lindahl: GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics 29(7): 845-854 (2013)

Sander Pronk, Per Larsson, Iman Pouya, Gregory R. Bowman, Imran S. Haque, Kyle Beauchamp, Berk Hess, Vijay S. Pande, Peter M. Kasson, Erik Lindahl: Copernicus: a new paradigm for parallel adaptive molecular dynamics. SC 2011: 60

Peter M. Kasson, Erik Lindahl, Vijay S. Pande: Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails. PLoS Computational Biology 6(6) (2010)

Peter M. Kasson, Vijay S. Pande: Cross-Graining: Efficient Multi-Scale Simulation via Markov State Models. Pacific Symposium on Biocomputing 2010: 260-268

Peter M. Kasson, Vijay S. Pande: Combining Mutual Information with Structural Analysis to Screen for Functionally Important Residues in Influenza Hemagglutinin. Pacific Symposium on Biocomputing 2009: 492-503

Peter M. Kasson, Afra Zomorodian, Sanghyun Park, Nina Singhal, Leonidas J. Guibas, Vijay S. Pande: Persistent voids: a new structural metric for membrane fusion. Bioinformatics 23(14): 1753-1759 (2007)

Peter M. Kasson, Vijay S. Pande: Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics. PLoS Computational Biology 3(11) (2007)

Peter M. Kasson, Vijay S. Pande: Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide. Pacific Symposium on Biocomputing 2007: 40-50

Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger: A hybrid machine-learning approach for segmentation of protein localization data. Bioinformatics 21(19): 3778-3786 (2005)

Peter M. Kasson, Mark M. Davis, Axel T. Brünger: Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking. CSB 2005: 208-211

Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger: Quantitative Analysis of Membrane Protein Localization and Signaling. CSB 2004: 540-541

Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger: Quantitative analysis of lymphocyte membrane protein redistribution from fluorescence microscopy. ICIP 2004: 2933-2936

Peter M. Kasson, Vijay S. Pande: Computational Simulation of Lipid Bilayer Reorientation at Gaps. CSB 2003: 464-467