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Sun Kim
2010 – today
- 2013
[j33]Kyeong-Yeon Lee, Sun Kim: Designing discriminative spatial filter vectors in motor imagery brain-computer interface. Int. J. Imaging Systems and Technology 23(2): 147-151 (2013)- [j32]Sun Kim, Ae Ja Yee: The Rogers-Ramanujan-Gordon identities, the generalized Göllnitz-Gordon identities, and parity questions. J. Comb. Theory, Ser. A 120(5): 1038-1056 (2013)
- 2012
- [j31]Sun Kim, Dongseop Kwon, Soo-Yong Shin, W. John Wilbur: PIE the search: searching PubMed literature for protein interaction information. Bioinformatics 28(4): 597-598 (2012)
- [j30]Vikas Rao Pejaver, Jaehyun An, SungMin Rhee, Ankita Bhan, Jeong-Hyeon Choi, Boshu Liu, Heewook Lee, Pamela J. Brown, David Kysela, Yves V. Brun, Sun Kim: GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis. Bioinformatics 28(11): 1527-1529 (2012)
- [j29]Youngik Yang, Kenneth P. Nephew, Sun Kim: A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters. BMC Bioinformatics 13(S-3): S15 (2012)
- [j28]
- [c33]Kyeong-Yeon Lee, Sun Kim: Discriminative spatial pattern vectors selection for motor imagery classification. SMC 2012: 981-984
- 2011
- [j27]Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu: The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics 12(S-8): S3 (2011)
- [j26]Sun Kim, W. John Wilbur: Classifying protein-protein interaction articles using word and syntactic features. BMC Bioinformatics 12(S-8): S9 (2011)
- [j25]Sun Kim, Ae Ja Yee: Göllnitz-Gordon identities and parity questions. Eur. J. Comb. 32(2): 288-293 (2011)
- [j24]Kwangmin Choi, Sun Kim: Sequence-Based enzyme catalytic Domain Prediction Using Clustering and Aggregated Mutual Information Content. J. Bioinformatics and Computational Biology 9(5): 597-611 (2011)
- [c32]Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim: BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis. BIBM 2011: 494-499
- [c31]Kwangmin Choi, Sun Kim: Sequence-Based Enzyme Catalytic Domain Prediction Using Clustering and Aggregated Mutual Information Content. HISB 2011: 61-68
- [c30]Sun Kim, W. John Wilbur: An EM Clustering Algorithm which Produces a Dual Representation. ICMLA (2) 2011: 90-95
- [e3]Robert Grossman, Andrey Rzhetsky, Sun Kim, Wei Wang (Eds.): ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011. ACM 2011, ISBN 978-1-4503-0796-3
- 2010
- [j23]Sun Kim: Data mining for the study of disease genes and proteins. Artificial Intelligence in Medicine 49(3): 133-134 (2010)
- [j22]Youngik Yang, Donald Gilbert, Sun Kim: Annotation confidence score for genome annotation: a genome comparison approach. Bioinformatics 26(1): 22-29 (2010)
- [c29]Heejoon Chae, Kwangmin Choi, Sun Kim, Haleh Ashki: EGGSlicer: predicting biologically meaningful gene sets from gene clusters using gene ontology information. BCB 2010: 448-450
- [c28]Vikas Rao Pejaver, Sun Kim: Gene cluster profile vectors: A novel method to infer functional coupling using both gene proximity and co-occurrence profiles. BIBM 2010: 29-34
2000 – 2009
- 2009
- [j21]Fuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew: Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance. Bioinformatics 25(4): 430-434 (2009)
- [j20]Sun Kim, Jeongmi Kim, Byoung-Tak Zhang: Ensembled support vector machines for human papillomavirus risk type prediction from protein secondary structures. Comp. in Bio. and Med. 39(2): 187-193 (2009)
- [j19]Sun Kim: Bijective proofs of partition identities arising from modular equations. J. Comb. Theory, Ser. A 116(3): 699-712 (2009)
- [j18]Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew: MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. Nucleic Acids Research 37(Web-Server-Issue): 356-362 (2009)
- [c27]Elena Bautu, Sun Kim, Andrei Bautu, Henri Luchian, Byoung-Tak Zhang: Evolving hypernetwork models of binary time series for forecasting price movements on stock markets. IEEE Congress on Evolutionary Computation 2009: 166-173
- [c26]Jakramate Bootkrajang, Sun Kim, Byoung-Tak Zhang: Evolutionary hypernetwork classifiers for protein-proteininteraction sentence filtering. GECCO 2009: 185-192
- [c25]Youngik Yang, Sun Kim: Experience report: issues in comparing gene function annotation in text. SIGDOC 2009: 227-232
- 2008
- [j17]Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne: A machine-learning approach to combined evidence validation of genome assemblies. Bioinformatics 24(6): 744-750 (2008)
- [j16]Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim: Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinformatics 24(16): 1745-1748 (2008)
- [j15]Kwangmin Choi, Sun Kim: ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts. BMC Bioinformatics 9 (2008)
- [j14]Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yang: A gene pattern mining algorithm using interchangeable gene sets for prokaryotes. BMC Bioinformatics 9 (2008)
- [j13]Sun Kim, Soo-Yong Shin, In-Hee Lee, Soo-Jin Kim, Ram Sriram, Byoung-Tak Zhang: PIE: an online prediction system for protein-protein interactions from text. Nucleic Acids Research 36(Web-Server-Issue): 411-415 (2008)
- [c24]Youngik Yang, Jong Youl Choi, Kwangmin Choi, Marlon E. Pierce, Dennis Gannon, Sun Kim: BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment. eScience 2008: 159-165
- [c23]Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang: Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences. Pacific Symposium on Biocomputing 2008: 315-326
- [e2]Xue-wen Chen, Xiaohua Hu, Sun Kim (Eds.): 2008 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008, 3-5 November 2008, Philadephia, Pennsylvania, USA. IEEE Computer Society 2008, ISBN 978-0-7695-3452-7
- 2007
- [j12]Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim: dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinformatics 23(19): 2619-2621 (2007)
- [j11]Christopher Michael Hemmerich, Sun Kim: A Study of Residue Correlation within Protein Sequences and Its Application to Sequence Classification. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)
- [p2]Haixu Tang, Sun Kim: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments. Analysis of Biological Data: A Soft Computing Approach 2007: 3-24
- [c22]Chan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Cho, Byoung-Tak Zhang: Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm. BIBE 2007: 158-163
- [c21]Sun Kim, Ankita Bhan, Bharath K. Maryada, Kwangmin Choi, Yves V. Brun: EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching Techniques. BIBM 2007: 23-28
- [c20]Sun Kim, Soo-Jin Kim, Byoung-Tak Zhang: Evolving hypernetwork classifiers for microRNA expression profile analysis. IEEE Congress on Evolutionary Computation 2007: 313-319
- [c19]Kwangmin Choi, Youngik Yang, Sun Kim: CLASSEQ: Classification of Sequences via Comparative Analysis of Multiple Genomes. ICMLA 2007: 554-559
- 2006
- [j10]Do-Hoon Lee, Jeong-Hyeon Choi, Mehmet M. Dalkilic, Sun Kim: COMPAM : visualization of combining pairwise alignments for multiple genomes. Bioinformatics 22(2): 242-244 (2006)
- [j9]Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew: A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinformatics 22(18): 2210-2216 (2006)
- [j8]Bin Song, Jeong-Hyeon Choi, Guangyu Chen, Jacek Szymanski, Guo-Qiang Zhang, Anthony K. H. Tung, Jaewoo Kang, Sun Kim, Jiong Yang: ARCS: an aggregated related column scoring scheme for aligned sequences. Bioinformatics 22(19): 2326-2332 (2006)
- [j7]Takuma Tsukahara, Sun Kim, Milton W. Taylor: REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences - a case study with ISRE and GAS. Computational Biology and Chemistry 30(2): 134-147 (2006)
- [j6]Xue-wen Chen, Sun Kim, Vladimir I. Pavlovic, David Casasent: Advanced Signal Processing Techniques for Bioinformatics. EURASIP J. Adv. Sig. Proc. 2006 (2006)
- [j5]
- [c18]Sun Kim, Byoung-Tak Zhang: Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines. EvoWorkshops 2006: 57-66
- [c17]Kwangmin Choi, Amit Saple, Sun Kim: Genome Data Type: a Vehicle to Deliver a Genome Comparison System on the Web. ICDM Workshops 2006: 142-146
- [c16]Sun Kim, Jae-Hong Eom: Prediction of the Human Papillomavirus Risk Types Using Gap-Spectrum Kernels. ISNN (2) 2006: 710-715
- [c15]Jae-Hong Eom, Sun Kim, Seong-Hwan Kim, Byoung-Tak Zhang: A Tree Kernel-Based Method for Protein-Protein Interaction Mining from Biomedical Literature. KDLL 2006: 42-52
- [c14]Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic: An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences. VDMB 2006: 158-169
- [e1]Mehmet M. Dalkilic, Sun Kim, Jiong Yang (Eds.): Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers. Lecture Notes in Computer Science 4316, Springer 2006, ISBN 3-540-68970-2
- 2005
- [j4]Kwangmin Choi, Yu Ma, Jeong-Hyeon Choi, Sun Kim: PLATCOM: a Platform for Computational Comparative Genomics. Bioinformatics 21(10): 2514-2516 (2005)
- [j3]Jeong-Hyeon Choi, Hwan-Gue Cho, Sun Kim: GAME: A simple and efficient whole genome alignment method using maximal exact match filtering. Computational Biology and Chemistry 29(3): 244-253 (2005)
- [c13]Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim: PLATCOM: a Platform for Computational Comparative Genomics on the Web. CSB Workshops 2005: 27-30
- [c12]Sun Kim, Jeong-Hyeon Choi, Jiong Yang: Gene Teams with Relaxed Proximity Constraint. CSB 2005: 44-55
- [c11]Jason Lee, Sun Kim: Cluster Utility: A New Metric for Clustering Biological Sequences. CSB Workshops 2005: 45-46
- [c10]Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim: PLATCOM: Current Status and Plan for the Next Stages. DILS 2005: 300-304
- [c9]Sun Kim, Kyung-shik Shin, Kyungdo Park: An Application of Support Vector Machines for Customer Churn Analysis: Credit Card Case. ICNC (2) 2005: 636-647
- 2004
- [c8]In-Hee Lee, Sun Kim, Byoung-Tak Zhang: Multi-objective Evolutionary Probe Design Based on Thermodynamic Criteria for HPV Detection. PRICAI 2004: 742-750
- [c7]Jeong-Hyeon Choi, Kwangmin Choi, Hwan-Gue Cho, Sun Kim: Multiple Genome Alignment by Clustering Pairwise Matches. Comparative Genomics 2004: 30-41
- [c6]Zhiping Wang, Mehmet M. Dalkilic, Sun Kim: Guiding motif discovery by iterative pattern refinement. SAC 2004: 162-166
- 2003
- [j2]Sun Kim, Byoung-Tak Zhang: Genetic Mining of HTML Structures for Effective Web-Document Retrieval. Appl. Intell. 18(3): 243-256 (2003)
- [p1]Sun Kim: Graph Theoretic Sequence Clustering Algorithms and Their Applications to Genome Comparison. Computational Biology and Genome Informatics 2003: 81-116
- [c5]Irfan Gunduz, Sihui Zhao, Mehmet M. Dalkilic, Sun Kim: Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana. METMBS 2003: 29-34
- 2001
- [c4]Sun Kim, Li Liao, Jean-François Tomb: A probabilistic approach to sequence assembly validation. BIOKDD 2001: 38-43
- 2000
- [c3]Sun Kim, Byoung-Tak Zhang: Web-Document Retrieval by Genetic Learning of Importance Factors for HTML Tags. PRICAI Workshop on Text and Web Mining 2000: 13-23
1990 – 1999
- 1999
- [j1]Sun Kim: A New String-Pattern Matching Algorithm Using Partitioning and Hashing Efficiently. ACM Journal of Experimental Algorithmics 4: 2 (1999)
- [c2]Dong-Ho Shin, Yu-Hwan Kim, Sun Kim, Jae-Hong Eom, Hyung-Joo Shin, Byoung-Tak Zhang: SCAI TREC-8 Experiments. TREC 1999
- 1994
- [c1]
Coauthor Index
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last updated on 2013-05-25 21:24 CEST by the dblp team