Gunnar W. Klau

Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau: Charge Group Partitioning in Biomolecular Simulation. Journal of Computational Biology 20(3): 188-198 (2013)

Daniela Beisser, Stefan Brunkhorst, Thomas Dandekar, Gunnar W. Klau, Marcus T. Dittrich, Tobias Müller: Robustness and accuracy of functional modules in integrated network analysis. Bioinformatics 28(14): 1887-1894 (2012)

Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth: CLEVER: clique-enumerating variant finder. Bioinformatics 28(22): 2875-2882 (2012)

Inken Wohlers, Noël Malod-Dognin, Rumen Andonov, Gunnar W. Klau: CSA: comprehensive comparison of pairwise protein structure alignments. Nucleic Acids Research 40(Web-Server-Issue): 303-309 (2012)

Sandro Andreotti, Gunnar W. Klau, Knut Reinert: Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(2): 385-394 (2012)

Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau: Charge Group Partitioning in Biomolecular Simulation. RECOMB 2012: 29-43

Sebastian Böcker, Sebastian Briesemeister, Gunnar W. Klau: Exact Algorithms for Cluster Editing: Evaluation and Experiments. Algorithmica 60(2): 316-334 (2011)

Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau: An exact algorithm for side-chain placement in protein design. Optimization Letters 5(3): 393-406 (2011)

Inken Wohlers, Rumen Andonov, Gunnar W. Klau: Algorithm engineering for optimal alignment of protein structure distance matrices. Optimization Letters 5(3): 421-433 (2011)

Antonio Mucherino, Inken Wohlers, Gunnar W. Klau, Rumen Andonov: Sparsifying Distance Matrices for Protein-Protein Structure Alignments. CTW 2011: 211-214

Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre: On Tree-Constrained Matchings and Generalizations. ICALP (1) 2011: 98-109

Mohammed El-Kebir, Jaap Heringa, Gunnar W. Klau: Lagrangian Relaxation Applied to Sparse Global Network Alignment. PRIB 2011: 225-236

Sandro Andreotti, Gunnar W. Klau, Knut Reinert: Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem. CoRR abs/1102.4016 (2011)

Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau: An Exact Algorithm for Side-Chain Placement in Protein Design. CoRR abs/1103.1503 (2011)

Mohammed El-Kebir, Jaap Heringa, Gunnar W. Klau: Lagrangian Relaxation Applied to Sparse Global Network Alignment. CoRR abs/1108.4358 (2011)

C. Staiger, Sidney Cadot, R. Kooter, Marcus T. Dittrich, Tobias Müller, Gunnar W. Klau, Lodewyk F. A. Wessels: A critical evaluation of network and pathway based classifiers for outcome prediction in breast cancer. CoRR abs/1110.3717 (2011)

Daniela Beisser, Gunnar W. Klau, Thomas Dandekar, Tobias Müller, Marcus T. Dittrich: BioNet: an R-Package for the functional analysis of biological networks. Bioinformatics 26(8): 1129-1130 (2010)

Inken Wohlers, Francisco S. Domingues, Gunnar W. Klau: Towards optimal alignment of protein structure distance matrices. Bioinformatics 26(18): 2273-2280 (2010)

Gunnar W. Klau, Jacques Nicolas: Introduction to the Special Theme: Computational Biology. ERCIM News 2010(82): 10-11 (2010)

Gunnar W. Klau, Neal Lesh, Joe Marks, Michael Mitzenmacher: Human-guided search. J. Heuristics 16(3): 289-310 (2010)

Sebastian Böcker, Sebastian Briesemeister, Gunnar W. Klau: On optimal comparability editing with applications to molecular diagnostics. BMC Bioinformatics 10(S-1) (2009)

Gunnar W. Klau: A new graph-based method for pairwise global network alignment. BMC Bioinformatics 10(S-1) (2009)

Inken Wohlers, Lars Petzold, Francisco S. Domingues, Gunnar W. Klau: PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation. BMC Bioinformatics 10(S-13): 0 (2009)

Annette Kik, Gunnar W. Klau: Fighting Lymph Cancer with Mathematics. ERCIM News 2009(77) (2009)

Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218

Inken Wohlers, Lars Petzold, Francisco S. Domingues, Gunnar W. Klau: Aligning Protein Structures Using Distance Matrices and Combinatorial Optimization. GCB 2009: 33-43

Markus Bauer, Gunnar W. Klau, Knut Reinert: An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment. Algorithmic Operations Research 3(2) (2008)

Christoph Buchheim, Markus Chimani, Dietmar Ebner, Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Petra Mutzel, René Weiskircher: A branch-and-cut approach to the crossing number problem. Discrete Optimization 5(2): 373-388 (2008)

Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller: Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB 2008: 223-231

Sebastian Böcker, Sebastian Briesemeister, Gunnar W. Klau: Exact Algorithms for Cluster Editing: Evaluation and Experiments. WEA 2008: 289-302

Markus Bauer, Gunnar W. Klau, Knut Reinert: Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization. BMC Bioinformatics 8 (2007)

Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155(6-7): 840-856 (2007)

Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern: A General Paradigm for Fast, Adaptive Clustering of Biological Sequences. German Conference on Bioinformatics 2007: 15-29

Ivana Ljubic, René Weiskircher, Ulrich Pferschy, Gunnar W. Klau, Petra Mutzel, Matteo Fischetti: An Algorithmic Framework for the Exact Solution of the Prize-Collecting Steiner Tree Problem. Math. Program. 105(2-3): 427-449 (2006)

Patrick May, Gunnar W. Klau, Markus Bauer, Thomas Steinke: Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. GCCB 2006: 19-32

Christian A. Duncan, Gunnar W. Klau, Stephen G. Kobourov, Georg Sander: Graph-Drawing Contest Report. Graph Drawing 2006: 448-452

Sven Rahmann, Gunnar W. Klau: Integer Linear Programs for Discovering Approximate Gene Clusters. WABI 2006: 298-309

Ivana Ljubic, René Weiskircher, Ulrich Pferschy, Gunnar W. Klau, Petra Mutzel, Matteo Fischetti: Solving the Prize-Collecting Steiner Tree Problem to Optimality. ALENEX/ANALCO 2005: 68-76

Markus Bauer, Gunnar W. Klau, Knut Reinert: Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. CompLife 2005: 217-228

Christoph Buchheim, Dietmar Ebner, Michael Jünger, Gunnar W. Klau, Petra Mutzel, René Weiskircher: Exact Crossing Minimization. Graph Drawing 2005: 37-48

Markus Chimani, Gunnar W. Klau, René Weiskircher: Non-planar Orthogonal Drawings with Fixed Topology. SOFSEM 2005: 96-105

Markus Bauer, Gunnar W. Klau, Knut Reinert: Multiple Structural RNA Alignment with Lagrangian Relaxation. WABI 2005: 303-314

Gunnar W. Klau: A combinatorial approach to orthogonal placement problems. Saarland University 2004

Gunnar W. Klau, René Weiskircher: Robustness and Resilience. Network Analysis 2004: 417-437

Dietmar Ebner, Gunnar W. Klau, René Weiskircher: Label Number Maximization in the Slider Model. Graph Drawing 2004: 144-154

Gunnar W. Klau, Ivana Ljubic, Andreas Moser, Petra Mutzel, Philipp Neuner, Ulrich Pferschy, Günther R. Raidl, René Weiskircher: Combining a Memetic Algorithm with Integer Programming to Solve the Prize-Collecting Steiner Tree Problem. GECCO (1) 2004: 1304-1315

Markus Bauer, Gunnar W. Klau: Structural Alignment of Two RNA Sequences with Lagrangian Relaxation. ISAAC 2004: 113-123

Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert: Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193

Gunnar W. Klau, Petra Mutzel: Optimal labeling of point features in rectangular labeling models. Math. Program. 94(2-3): 435-458 (2003)

Gunnar W. Klau, Ivana Ljubic, Petra Mutzel, Ulrich Pferschy, René Weiskircher: The Fractional Prize-Collecting Steiner Tree Problem on Trees: Extended Abstract. ESA 2003: 691-702

Gunnar W. Klau, Neal Lesh, Joe Marks, Michael Mitzenmacher: Human-Guided Tabu Search. AAAI/IAAI 2002: 41-47

Stacey D. Scott, Neal Lesh, Gunnar W. Klau: Investigating human-computer optimization. CHI 2002: 155-162

Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Sebastian Leipert, Petra Mutzel: Graph Drawing Algorithm Engineering with AGD. Software Visualization 2001: 307-323

Carsten Gutwenger, Michael Jünger, Gunnar W. Klau, Sebastian Leipert, Petra Mutzel, René Weiskircher: AGD: A Library of Algorithms for Graph Drawing. Graph Drawing 2001: 473-474

Gunnar W. Klau, Petra Mutzel: Optimal Labelling of Point Features in the Slider Model. COCOON 2000: 340-350

Gunnar W. Klau, Karsten Klein, Petra Mutzel: An Experimental Comparison of Orthogonal Compaction Algorithms (Extended Abstract). Graph Drawing 2000: 37-51

Markus Eiglsperger, Sándor P. Fekete, Gunnar W. Klau: Orthogonal Graph Drawing. Drawing Graphs 1999: 121-171

Gunnar W. Klau, Petra Mutzel: Combining Graph Labeling and Compaction. Graph Drawing 1999: 27-37

Gunnar W. Klau, Petra Mutzel: Optimal Compaction of Orthogonal Grid Drawings. IPCO 1999: 304-319

Petra Mutzel, Carsten Gutwenger, Ralf Brockenauer, Sergej Fialko, Gunnar W. Klau, Michael Krüger, Thomas Ziegler, Stefan Näher, David Alberts, Dirk Ambras, Gunter Koch, Michael Jünger, Christoph Buchheim, Sebastian Leipert: A Library of Algorithms for Graph Drawing. Graph Drawing 1998: 456-457