Natalio Krasnogor

Jianyong Sun, Jonathan M. Garibaldi, Natalio Krasnogor, Q. Zhang: An Intelligent Multi-Restart Memetic Algorithm for Box Constrained Global Optimisation. Evolutionary Computation 21(1): 107-147 (2013)

Meng-Hiot Lim, Steven Gustafson, Natalio Krasnogor, Yew-Soon Ong: Editorial. Memetic Computing 5(1): 1-2 (2013)

Germán Terrazas, Natalio Krasnogor: A genotype-phenotype-fitness assessment protocol for evolutionary self-assembly Wang tiles design. Memetic Computing 5(1): 19-33 (2013)

María A. Franco, Natalio Krasnogor, Jaume Bacardit: GAssist vs. BioHEL: critical assessment of two paradigms of genetics-based machine learning. Soft Comput. 17(6): 953-981 (2013)

Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Reinhard Schneider, Alfonso Valencia: EnrichNet: network-based gene set enrichment analysis. Bioinformatics 28(18): 451-457 (2012)

Jaume Bacardit, Pawel Widera, Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Natalio Krasnogor: Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features. Bioinformatics 28(19): 2441-2448 (2012)

J. C. Chaplin, N. A. Russell, Natalio Krasnogor: Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates. Biosystems 109(1): 35-51 (2012)

María A. Franco, Natalio Krasnogor, Jaume Bacardit: Analysing BioHEL using challenging boolean functions. Evolutionary Intelligence 5(2): 87-102 (2012)

Meng-Hiot Lim, Natalio Krasnogor, Yew-Soon Ong, Steven Gustafson: Editorial. Memetic Computing 4(1): 1-2 (2012)

María A. Franco, Natalio Krasnogor, Jaume Bacardit: Post-processing operators for decision lists. GECCO 2012: 847-854

Carlos A. Coello Coello, Julie Greensmith, Natalio Krasnogor, Pietro Liò, Giuseppe Nicosia, Mario Pavone (Eds.): Artificial Immune Systems - 11th International Conference, ICARIS 2012, Taormina, Italy, August 28-31, 2012. Proceedings. Lecture Notes in Computer Science 7597, Springer 2012, isbn 978-3-642-33756-7

David Alejandro Pelta, Natalio Krasnogor, Dan Dumitrescu, Camelia Chira, Rodica Ioana Lung (Eds.): Nature Inspired Cooperative Strategies for Optimization, NICSO 2011, Cluj-Napoca, Romania, October 20-22, 2011. Studies in Computational Intelligence 387, Springer 2012, isbn 978-3-642-24093-5

Jonathan Blakes, Jamie Twycross, Francisco José Romero-Campero, Natalio Krasnogor: The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics 27(23): 3323-3324 (2011)

Natalio Krasnogor: Darwin's magic: Evolutionary computation in nanoscience, bioinformatics and systems biology. IEEE Congress on Evolutionary Computation 2011: 1-3

Natalio Krasnogor: (Computational) synthetic biology. GECCO (Companion) 2011: 1161-1190

María A. Franco, Natalio Krasnogor, Jaume Bacardit: Modelling the initialisation stage of the ALKR representation for discrete domains and GABIL encoding. GECCO 2011: 1291-1298

Germán Terrazas, Natalio Krasnogor: Genotype-Fitness Correlation Analysis for Evolutionary Design of Self-assembly Wang Tiles. NICSO 2011: 73-84

Natalio Krasnogor, Pier Luca Lanzi (Eds.): 13th Annual Genetic and Evolutionary Computation Conference, GECCO 2011, Proceedings, Dublin, Ireland, July 12-16, 2011. ACM 2011, isbn 978-1-4503-0557-0

Natalio Krasnogor, Pier Luca Lanzi (Eds.): 13th Annual Genetic and Evolutionary Computation Conference, GECCO 2011, Companion Material Proceedings, Dublin, Ireland, July 12-16, 2011. ACM 2011, isbn 978-1-4503-0690-4

Pawel Widera, Natalio Krasnogor: Protein Models Comparator. CoRR abs/1102.4293 (2011)

Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia: TopoGSA: network topological gene set analysis. Bioinformatics 26(9): 1271-1272 (2010)

Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia: Extending pathways and processes using molecular interaction networks to analyse cancer genome data. BMC Bioinformatics 11: 597 (2010)

Robert Elliott Smith, Max Kun Jiang, Jaume Bacardit, Michael Stout, Natalio Krasnogor, Jonathan D. Hirst: A learning classifier system with mutual-information-based fitness. Evolutionary Intelligence 3(1): 31-50 (2010)

Pawel Widera, Jonathan M. Garibaldi, Natalio Krasnogor: GP challenge: evolving energy function for protein structure prediction. Genetic Programming and Evolvable Machines 11(1): 61-88 (2010)

Natalio Krasnogor, Giuseppe Nicosia, Mario Pavone, David A. Pelta: Special issue on Nature Inspired Cooperative Strategies for Optimisation (NICSO). Natural Computing 9(1): 1-3 (2010)

Germán Terrazas, Natalio Krasnogor: Grammatical rules for the automated construction of heuristics. IEEE Congress on Evolutionary Computation 2010: 1-8

Gianluigi Folino, Azhar Ali Shah, Natalio Krasnogor: On the Scalability of Multi-Criteria Protein Structure Comparison in the Grid. Euro-Par Workshops 2010: 193-200

Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor: Learning Pathway-based Decision Rules to Classify Microarray Cancer Samples. GCB 2010: 123-134

Carlos García-Martínez, Claudio Lima, Jamie Twycross, Natalio Krasnogor, Manuel Lozano: P system model optimisation by means of evolutionary based search algorithms. GECCO 2010: 187-194

María A. Franco, Natalio Krasnogor, Jaume Bacardit: Speeding up the evaluation of evolutionary learning systems using GPGPUs. GECCO 2010: 1039-1046

María A. Franco, Natalio Krasnogor, Jaume Bacardit: Analysing bioHEL using challenging boolean functions. GECCO (Companion) 2010: 1855-1862

Pawel Widera, Jaume Bacardit, Natalio Krasnogor, Carlos García-Martínez, Manuel Lozano: Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology. GECCO (Companion) 2010: 1991-1998

Germán Terrazas, Dario Landa-Silva, Natalio Krasnogor: Discovering Beneficial Cooperative Structures for the Automated Construction of Heuristics. NICSO 2010: 89-100

Germán Terrazas, Dario Landa-Silva, Natalio Krasnogor: Towards the Design of Heuristics by Means of Self-Assembly. DCM 2010: 135-146

Juan Ramón González, David A. Pelta, Carlos Cruz, Germán Terrazas, Natalio Krasnogor (Eds.): Nature Inspired Cooperative Strategies for Optimization, NICSO 2010, May 12-14, 2010, Granada, Spain. Studies in Computational Intelligence 284, Springer 2010, isbn 978-3-642-12537-9

Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Alfonso Valencia, Robert Elliott Smith, Natalio Krasnogor: Automated Alphabet Reduction for Protein Datasets. BMC Bioinformatics 10 (2009)

Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasnogor: ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. BMC Bioinformatics 10: 358 (2009)

Quang Huy Nguyen, Yew-Soon Ong, Meng-Hiot Lim, Natalio Krasnogor: Adaptive Cellular Memetic Algorithms. Evolutionary Computation 17(2): 231-256 (2009)

Jaume Bacardit, Natalio Krasnogor: Performance and Efficiency of Memetic Pittsburgh Learning Classifier Systems. Evolutionary Computation 17(3): 307-342 (2009)

Francisco José Romero-Campero, Jamie Twycross, Miguel Cámara, Malcolm Bennett, Marian Gheorghe, Natalio Krasnogor: Modular Assembly of Cell Systems Biology Models Using P Systems. Int. J. Found. Comput. Sci. 20(3): 427-442 (2009)

David A. Pelta, Natalio Krasnogor: Nature-inspired cooperative strategies for optimization. Int. J. Intell. Syst. 24(7): 723-725 (2009)

Lin Li, Jonathan M. Garibaldi, Natalio Krasnogor: Automated self-assembly programming paradigm: The impact of network topology. Int. J. Intell. Syst. 24(7): 793-817 (2009)

Meng-Hiot Lim, Steven Gustafson, Natalio Krasnogor, Yew-Soon Ong: Editorial to the first issue. Memetic Computing 1(1): 1-2 (2009)

Jaume Bacardit, Edmund K. Burke, Natalio Krasnogor: Improving the scalability of rule-based evolutionary learning. Memetic Computing 1(1): 55-67 (2009)

Meng-Hiot Lim, Steven Gustafson, Natalio Krasnogor, Yew-Soon Ong: Editorial. Memetic Computing 1(3): 173-174 (2009)

Marian Gheorghe, Natalio Krasnogor: P-systems and X-machines. Natural Computing 8(4): 777-779 (2009)

Michael Stout, Jaume Bacardit, Jonathan D. Hirst, Robert Elliott Smith, Natalio Krasnogor: Prediction of topological contacts in proteins using learning classifier systems. Soft Comput. 13(3): 245-258 (2009)

Gianluigi Folino, Azhar Ali Shah, Natalio Krasnogor: On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid. CBMS 2009: 1-8

Pawel Widera, Jonathan M. Garibaldi, Natalio Krasnogor: Evolutionary design of the energy function for protein structure prediction. IEEE Congress on Evolutionary Computation 2009: 1305-1312

Linda Fiaschi, Jonathan M. Garibaldi, Natalio Krasnogor: A framework for the application of decision trees to the analysis of SNPs data. CIBCB 2009: 106-113

Francisco José Romero-Campero, Natalio Krasnogor: An Approach to the Engineering of Cellular Models Based on P Systems. CiE 2009: 430-436

James Smaldon, Natalio Krasnogor, Alexander Cameron, Marian Gheorghe: Liposome logic. GECCO 2009: 161-168

Jaume Bacardit, Natalio Krasnogor: A mixed discrete-continuous attribute list representation for large scale classification domains. GECCO 2009: 1155-1162

Natalio Krasnogor: Synthetic biology: modelling and optimisation. GECCO (Companion) 2009: 3439-3488

Linda Fiaschi, Jonathan M. Garibaldi, Natalio Krasnogor: Multiple-Test Analysis of Sequences of SNPs for Determining Susceptibility to Pre-eclampsia. Computational Intelligence and Bioengineering 2009: 141-154

Natalio Krasnogor, Belén Melián-Batista, José A. Moreno-Pérez, J. Marcos Moreno-Vega, David A. Pelta (Eds.): Nature Inspired Cooperative Strategies for Optimization, NICSO 2008, Puerto de La Cruz, Tenerife, Spain, 12-14 November 2008. Studies in Computational Intelligence 236, Springer 2009, isbn 978-3-642-03210-3

Natalio Krasnogor, Giuseppe Nicosia, Mario Pavone, David A. Pelta (Eds.): Nature Inspired Cooperative Strategies for Optimization (NICSO 2007). Studies in Computational Intelligence 129, Springer 2008, isbn 978-3-540-78986-4

Michael Stout, Jaume Bacardit, Jonathan D. Hirst, Natalio Krasnogor: Prediction of recursive convex hull class assignments for protein residues. Bioinformatics 24(7): 916-923 (2008)

Marian Gheorghe, Natalio Krasnogor, Miguel Cámara: P systems applications to systems biology. Biosystems 91(3): 435-437 (2008)

Natalio Krasnogor, Jim Smith: Memetic Algorithms: The Polynomial Local Search Complexity Theory Perspective. J. Math. Model. Algorithms 7(1): 3-24 (2008)

James Smaldon, Jonathan Blakes, Natalio Krasnogor, Doron Lancet: A multi-scaled approach to artificial life simulation with P systems and dissipative particle dynamics. GECCO 2008: 249-256

Francisco José Romero-Campero, Hongqing Cao, Miguel Cámara, Natalio Krasnogor: Structure and parameter estimation for cell systems biology models. GECCO 2008: 331-338

Jaume Bacardit, Natalio Krasnogor: Fast rule representation for continuous attributes in genetics-based machine learning. GECCO 2008: 1421-1422

Maximiliano Tabacman, Natalio Krasnogor, Jaume Bacardit, Irene Loiseau: Learning classifier systems for optimisation problems: a case study on fractal travelling salesman problem. GECCO (Companion) 2008: 2039-2046

Azhar Ali Shah, Daniel Barthel, Gianluigi Folino, Natalio Krasnogor: Performance Evaluation of Protein Structure Comparison Algorithms Under Integrated Resource Management Environment for MPI Jobs. ISPA 2008: 817-822

Francisco José Romero-Campero, Jamie Twycross, Hongqing Cao, Jonathan Blakes, Natalio Krasnogor: A Multiscale Modeling Framework Based on P Systems. Workshop on Membrane Computing 2008: 63-77

Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Natalio Krasnogor: Data Mining in Proteomics with Learning Classifier Systems. Learning Classifier Systems in Data Mining 2008: 17-46

Daniel Barthel, Jonathan D. Hirst, Jacek Blazewicz, Edmund K. Burke, Natalio Krasnogor: ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information. BMC Bioinformatics 8 (2007)

Germán Terrazas, Peter Siepmann, Graham Kendall, Natalio Krasnogor: An Evolutionary Methodology for the Automated Design of Cellular Automaton-based Complex Systems. J. Cellular Automata 2(1): 77-102 (2007)

Francesco Bernardini, Marian Gheorghe, Natalio Krasnogor: Quorum sensing P systems. Theor. Comput. Sci. 371(1-2): 20-33 (2007)

Yew-Soon Ong, Natalio Krasnogor, Hisao Ishibuchi: Special Issue on Memetic Algorithms. IEEE Transactions on Systems, Man, and Cybernetics, Part B 37(1): 2-5 (2007)

Germán Terrazas, Marian Gheorghe, Graham Kendall, Natalio Krasnogor: Evolving tiles for automated self-assembly design. IEEE Congress on Evolutionary Computation 2007: 2001-2008

Quang Huy Nguyen, Yew-Soon Ong, Natalio Krasnogor: A study on the design issues of Memetic Algorithm. IEEE Congress on Evolutionary Computation 2007: 2390-2397

Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Kumara Sastry, Xavier Llorà, Natalio Krasnogor: Automated alphabet reduction method with evolutionary algorithms for protein structure prediction. GECCO 2007: 346-353

Vincenzo Cutello, Natalio Krasnogor, Giuseppe Nicosia, Mario Pavone: Immune Algorithm Versus Differential Evolution: A Comparative Case Study Using High Dimensional Function Optimization. ICANNGA (1) 2007: 93-101

Azhar Ali Shah, Daniel Barthel, Natalio Krasnogor: Grid and Distributed Public Computing Schemes for Structural Proteomics: A Short Overview. ISPA Workshops 2007: 424-434

Jaume Bacardit, Natalio Krasnogor: Empirical Evaluation of Ensemble Techniques for a Pittsburgh Learning Classifier System. IWLCS 2007: 255-268

Gregory Gutin, Daniel Karapetyan, Natalio Krasnogor: Memetic Algorithm for the Generalized Asymmetric Traveling Salesman Problem. NICSO 2007: 199-210

Michael Stout, Jaume Bacardit, Jonathan D. Hirst, Natalio Krasnogor, Jacek Blazewicz: From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems. EvoWorkshops 2006: 208-220

Jaume Bacardit, Michael Stout, Natalio Krasnogor, Jonathan D. Hirst, Jacek Blazewicz: Coordination number prediction using learning classifier systems: performance and interpretability. GECCO 2006: 247-254

Jaume Bacardit, Natalio Krasnogor: Smart crossover operator with multiple parents for a Pittsburgh learning classifier system. GECCO 2006: 1441-1448

Luca Bianco, Dario Pescini, Peter Siepmann, Natalio Krasnogor, Francisco José Romero-Campero, Marian Gheorghe: Towards a P Systems Pseudomonas Quorum Sensing Model. Workshop on Membrane Computing 2006: 197-214

Francesco Bernardini, Marian Gheorghe, Natalio Krasnogor, Gheorghe Paun: Turing Machines with Cells on the Tape. Nanotechnology: Science and Computation 2006: 335-348

Natalio Krasnogor, Marian Gheorghe, Germán Terrazas, Steve Diggle, Paul Williams, Miguel Cámara: An Appealing Computational Mechanism Drawn from Bacterial Quorum Sensing. Bulletin of the EATCS 85: 135-148 (2005)

David A. Pelta, Natalio Krasnogor: Editorial. Fuzzy Sets and Systems 152(1): 1-3 (2005)

David A. Pelta, Natalio Krasnogor, Carlos Bousoño-Calzón, José L. Verdegay, Jonathan D. Hirst, Edmund K. Burke: A fuzzy sets based generalization of contact maps for the overlap of protein structures. Fuzzy Sets and Systems 152(1): 103-123 (2005)

Natalio Krasnogor, James Smith: A tutorial for competent memetic algorithms: model, taxonomy, and design issues. IEEE Trans. Evolutionary Computation 9(5): 474-488 (2005)

Natalio Krasnogor, Graciela Terrazas, David A. Pelta, Gabriela Ochoa: A Critical View of the Evolutionary Design of Self-assembling Systems. Artificial Evolution 2005: 179-188

Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor: Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding. Artificial Evolution 2005: 247-258

Steven Gustafson, Edmund K. Burke, Natalio Krasnogor: On improving genetic programming for symbolic regression. Congress on Evolutionary Computation 2005: 912-919

Germán Terrazas, Natalio Krasnogor, Graham Kendall, Marian Gheorghe: Automated tile design for self-assembly conformations. Congress on Evolutionary Computation 2005: 1808-1814

Francesco Bernardini, Marian Gheorghe, Natalio Krasnogor, Germán Terrazas: Membrane Computing - Current Results and Future Problems. CiE 2005: 49-53

Germán Terrazas, Natalio Krasnogor, Marian Gheorghe, Francesco Bernardini, Steve Diggle, Miguel Cámara: An Environment Aware P-System Model of Quorum Sensing. CiE 2005: 479-485

Gabi Escuela, Gabriela Ochoa, Natalio Krasnogor: Evolving L-Systems to Capture Protein Structure Native Conformations. EuroGP 2005: 74-84

Steven M. Gustafson, Edmund K. Burke, Natalio Krasnogor: The Tree-String Problem: An Artificial Domain for Structure and Content Search. EuroGP 2005: 215-226

Carlos Bousoño-Calzón, Alicia Oropesa-García, Natalio Krasnogor: Selecting protein fuzzy contact maps through information and structure measures. EUSFLAT Conf. 2005: 1106-1111

David A. Pelta, Juan Ramón González, Natalio Krasnogor: Protein Structure Comparison through Fuzzy Contact Maps and the Universal Similarity Metric. EUSFLAT Conf. 2005: 1124-1129

Francesco Bernardini, Marian Gheorghe, Natalio Krasnogor, Ravie C. Muniyandi, Mario J. Pérez-Jiménez, Francisco José Romero-Campero: On P Systems as a Modelling Tool for Biological Systems. Workshop on Membrane Computing 2005: 114-133

Francesco Bernardini, Francisco José Romero-Campero, Marian Gheorghe, Mario J. Pérez-Jiménez, Maurice Margenstern, Sergey Verlan, Natalio Krasnogor: On P Systems with Bounded Parallelism. SYNASC 2005: 399-406

Francesco Bernardini, Marian Gheorghe, Natalio Krasnogor, Jean-Louis Giavitto: On Self-assembly in Population P Systems. UC 2005: 46-57

Natalio Krasnogor, David A. Pelta: Measuring the similarity of protein structures by means of the universal similarity metric. Bioinformatics 20(7): 1015-1021 (2004)

Manuel Lozano, Francisco Herrera, Natalio Krasnogor, Daniel Molina: Real-Coded Memetic Algorithms with Crossover Hill-Climbing. Evolutionary Computation 12(3): 273-302 (2004)

Natalio Krasnogor: Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case. Genetic Programming and Evolvable Machines 5(2): 181-201 (2004)

Natalio Krasnogor, Steven Gustafson: A Study on the use of "self-generation" in memetic algorithms. Natural Computing 3(1): 53-76 (2004)

Robert D. Carr, William E. Hart, Natalio Krasnogor, Jonathan D. Hirst, Edmund K. Burke, James Smith: Alignment Of Protein Structures With A Memetic Evolutionary Algorithm. GECCO 2002: 1027-1034

Edmund K. Burke, Steven M. Gustafson, Graham Kendall, Natalio Krasnogor: Advanced Population Diversity Measures in Genetic Programming. PPSN 2002: 341-350

Natalio Krasnogor, B. P. Blackburne, Edmund K. Burke, Jonathan D. Hirst: Multimeme Algorithms for Protein Structure Prediction. PPSN 2002: 769-778

Natalio Krasnogor, Jim Smith: A Memetic Algorithm With Self-Adaptive Local Search: TSP as a case study. GECCO 2000: 987-994

Natalio Krasnogor, Pablo E. Martínez López, Pablo Mocciola, David A. Pelta: Protien Folding meets Functional Programming. ICFP 1997: 313

Natalio Krasnogor, Pablo E. Martínez López, Pablo Mocciola, David A. Pelta: Modelling String Folding with G2L Grammars. ICFP 1997: 314