Michael Krauthammer

Tobias Kuhn, Paolo Emilio Barbano, Mate Levente Nagy, Michael Krauthammer: Broadening the Scope of Nanopublications. CoRR abs/1303.2446 (2013)

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinformatics 13(S-1): S10 (2012)

Perry Evans, Michael Krauthammer: Estimating a gene's mutation burden by the number of observed synonymous base substitutions. BIBM 2012: 1-6

Samah Jamal Fodeh, Ali Haddad, Cynthia Brandt, Martin H. Schultz, Michael Krauthammer: Enhancing Clustering by Exploiting Complementary Data Modalities in the Medical Domain. AIAI (1) 2012: 357-367

Tobias Kuhn, Michael Krauthammer: Image Mining from Gel Diagrams in Biomedical Publications. CoRR abs/1209.1481 (2012)

Tobias Kuhn, Michael Krauthammer: Underspecified Scientific Claims in Nanopublications. CoRR abs/1209.1483 (2012)

Vijay Garla, Yong Kong, Sebastian Szpakowski, Michael Krauthammer: MU2A - reconciling the genome and transcriptome to determine the effects of base substitutions. Bioinformatics 27(3): 416-418 (2011)

Songhua Xu, Michael Krauthammer: A new pivoting and iterative text detection algorithm for biomedical images. Journal of Biomedical Informatics 43(6): 924-931 (2010)

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: Analysis of Cancer Omics Data In A Semantic Web Framework. SWAT4LS 2010

Matthew Holford, James P. McCusker, Kei-Hoi Cheung, Michael Krauthammer: Analysis Of Cancer Omics Data In A Semantic Web Framework. CoRR abs/1012.1648 (2010)

James P. McCusker, Joshua A. Phillips, Alejandra González Beltrán, Anthony Finkelstein, Michael Krauthammer: Semantic web data warehousing for caGrid. BMC Bioinformatics 10(S-10): 2 (2009)

Pavithra Shivakumar, Michael Krauthammer: Structural similarity assessment for drug sensitivity prediction in cancer. BMC Bioinformatics 10(S-9): 17 (2009)

Richard N. Shiffman, George Michel, Michael Krauthammer, Norbert E. Fuchs, Kaarel Kaljurand, Tobias Kuhn: Writing Clinical Practice Guidelines in Controlled Natural Language. CNL 2009: 265-280

Songhua Xu, James P. McCusker, Michael Krauthammer: Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinformatics 24(17): 1968-1970 (2008)

Michael Krauthammer, Thaibinh Luong: Term Mapping Using Matrix Operations. Ontologies and Text Mining for Life Sciences 2008

Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein: Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinformatics 23(22): 3073-3079 (2007)

Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer: A semantic web approach to biological pathway data reasoning and integration. J. Web Sem. 4(3): 207-215 (2006)

Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky: Probabilistic inference of molecular networks from noisy data sources. Bioinformatics 20(8): 1205-1213 (2004)

Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur: GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. Journal of Biomedical Informatics 37(1): 43-53 (2004)

Michael Krauthammer, Goran Nenadic: Term identification in the biomedical literature. Journal of Biomedical Informatics 37(6): 512-526 (2004)

Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky: Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257

Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Steven B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman: GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5

Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) 2001: 74-82

Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman: A knowledge model for analysis and simulation of regulatory networks. Bioinformatics 16(12): 1120-1128 (2000)