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Nikos Kyrpides
2010 – today
- 2012
[j18]Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer: The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinformatics 13: 141 (2012)- [j17]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Research 40(Database-Issue): 115-122 (2012)
- [j16]Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Research 40(Database-Issue): 123-129 (2012)
- [j15]Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides: The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 40(Database-Issue): 571-579 (2012)
- 2011
- [c4]Folker Meyer, Nikos Kyrpides: Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments. BIOINFORMATICS 2011: 363-366
- 2010
- [j14]Sean D. Hooper, Daniel Dalevi, Amrita Pati, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics 26(3): 295-301 (2010)
- [j13]Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides: The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 38(Database-Issue): 346-354 (2010)
- [j12]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Research 38(Database-Issue): 382-390 (2010)
2000 – 2009
- 2009
- [j11]Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides: IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25(17): 2271-2278 (2009)
- 2008
- [j10]Konstantinos Liolios, Konstantinos Mavrommatis, Nektarios Tavernarakis, Nikos Kyrpides: The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 36(Database-Issue): 475-479 (2008)
- [j9]Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Research 36(Database-Issue): 528-533 (2008)
- [j8]Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research 36(Database-Issue): 534-538 (2008)
- [c3]Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz: Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13
- 2007
- [j7]Charles Bland, Teresa L. Ramsey, Fareedah Sabree, Micheal Lowe, Kyndall Brown, Nikos Kyrpides, Philip Hugenholtz: CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics 8 (2007)
- 2006
- [j6]Konstantinos Liolios, Nektarios Tavernarakis, Philip Hugenholtz, Nikos Kyrpides: The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Research 34(Database-Issue): 332-334 (2006)
- [j5]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system. Nucleic Acids Research 34(Database-Issue): 344-348 (2006)
- [c2]Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides: An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367
- 2005
- [c1]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides: The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB 2005: 1067-1078
- 2003
- [j4]Ross A. Overbeek, Niels Larsen, Theresa Walunas, Mark D'Souza, Gordon D. Pusch, Evgeni Selkov Jr., Konstantinos Liolios, Viktor Joukov, Denis Kaznadzey, Iain Anderson, Anamitra Bhattacharyya, Henry Burd, Warren Gardner, Paul Hanke, Vinayak Kapatral, Natalia Mikhailova, Olga Vassieva, Andrei Osterman, Veronika Vonstein, Michael Fonstein, Natalia Ivanova, Nikos Kyrpides: The ERGOTM genome analysis and discovery system. Nucleic Acids Research 31(1): 164-171 (2003)
- 2001
- [j3]Axel Bernal, Uy Ear, Nikos Kyrpides: Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Research 29(1): 126-127 (2001)
- 2000
- [j2]Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, Mark D'Souza, Evgeni Selkov Jr., Nikos Kyrpides, Michael Fonstein, Natalia Maltsev, Evgeni Selkov: WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction. Nucleic Acids Research 28(1): 123-125 (2000)
1990 – 1999
- 1999
- [j1]Nikos Kyrpides: Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide. Bioinformatics 15(9): 773-774 (1999)
Coauthor Index
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last updated on 2013-03-01 21:03 CET by the dblp team