Tzong-Yi Lee

Tzu-Hao Chang, Li-Ching Wu, Tzong-Yi Lee, Shu-Pin Chen, Hsien-Da Huang, Jorng-Tzong Horng: EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. Journal of Computer-Aided Molecular Design 27(1): 91-103 (2013)

Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen, Hsien-Da Huang: dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. Nucleic Acids Research 41(Database-Issue): 295-305 (2013)

Tzong-Yi Lee, Yi-Ju Chen, Cheng-Tsung Lu, Wei-Chieh Ching, Yu-Chuan Teng, Hsien-Da Huang, Yu-Ju Chen: dbSNO: a database of cysteine S-nitrosylation. Bioinformatics 28(17): 2293-2295 (2012)

Tzong-Yi Lee, Zong-Qing Lin, Sheng-Jen Hsieh, Neil Arvin Bretaña, Cheng-Tsung Lu: Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences. Bioinformatics [ISMB/ECCB] 27(13): 1780-1787 (2011)

Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha: Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties. Bioinformatics 27(15): 2062-2067 (2011)

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu: PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity. BMC Bioinformatics 12: 261 (2011)

Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang: miRTar: an integrated system for identifying miRNA-target interactions in Human. BMC Bioinformatics 12: 300 (2011)

Tzong-Yi Lee, Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Min-Gang Su, Kai-Yao Huang: Investigation and identification of protein γ. BMC Bioinformatics 12(S-13): S10 (2011)

Cheng-Tsung Lu, Shu-An Chen, Neil Arvin Bretaña, Tzu-Hsiu Cheng, Tzong-Yi Lee: Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites. Journal of Computer-Aided Molecular Design 25(10): 987-995 (2011)

Tzong-Yi Lee, Justin Bo-Kai Hsu, Wen-Chi Chang, Hsien-Da Huang: RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. Nucleic Acids Research 39(Database-Issue): 777-787 (2011)

Shu-An Chen, Tzong-Yi Lee, Yu-Yen Ou: Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins. BMC Bioinformatics 11: 536 (2010)

Tzong-Yi Lee, Justin Bo-Kai Hsu, Feng-Mao Lin, Wen-Chi Chang, Po-Chiang Hsu, Hsien-Da Huang: N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. Journal of Computational Chemistry 31(15): 2759-2771 (2010)

Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang: Incorporating structural characteristics for identification of protein methylation sites. Journal of Computational Chemistry 30(9): 1532-1543 (2009)

Wen-Chi Chang, Tzong-Yi Lee, Dray-Ming Shien, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang, Rong-Long Pan: Incorporating support vector machine for identifying protein tyrosine sulfation sites. Journal of Computational Chemistry 30(15): 2526-2537 (2009)

Yung-Hao Wong, Tzong-Yi Lee, Han-Kuen Liang, Chia-Mao Huang, Ting-Yuan Wang, Yi-Huan Yang, Chia-Huei Chu, Hsien-Da Huang, Ming-Tat Ko, Jenn-Kang Hwang: KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Research 35(Web-Server-Issue): 588-594 (2007)

Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang: An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. Journal of Computational Chemistry 27(9): 1020-1032 (2006)

Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, Tzu-Hao Wang: dbPTM: an information repository of protein post-translational modification. Nucleic Acids Research 34(Database-Issue): 622-627 (2006)

Jui-Hung Hung, Hsien-Da Huang, Tzong-Yi Lee: ProKware: integrated software for presenting protein structural properties in protein tertiary structures. Nucleic Acids Research 34(Web-Server-Issue): 89-94 (2006)

Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang: Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites. Journal of Computational Chemistry 26(10): 1032-1041 (2005)

Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Jorng-Tzong Horng: KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Research 33(Web-Server-Issue): 226-229 (2005)