Hans-Peter Lenhof

Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof, Andreas Hildebrandt: NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinformatics 14: 98 (2013)

Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller: miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics 13: 36 (2012)

Stefan Nickels, Hienke Sminia, Sabine C. Mueller, Bas Kools, Anna Katharina Dehof, Hans-Peter Lenhof, Andreas Hildebrandt: ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences. IV 2012: 578-583

Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt: Automated bond order assignment as an optimization problem. Bioinformatics 27(5): 619-625 (2011)

Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher: BALL - biochemical algorithms library 1.3. BMC Bioinformatics 11: 531 (2010)

Kay Nieselt, Michael Kaufmann, Andreas Gerasch, Hans-Peter Lenhof, Marcel Spehr, Stefan Hesse, Stefan Gumhold: Visuelle Analytik biologischer Daten. Informatik Spektrum 33(6): 559-568 (2010)

Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann: A new Lamarckian genetic algorithm for flexible ligand-receptor docking. Journal of Computational Chemistry 31(9): 1911-1918 (2010)

Mike Phillips, Iliyan Georgiev, Anna Katharina Dehof, Stefan Nickels, Lukas Marsalek, Hans-Peter Lenhof, Andreas Hildebrandt, Philipp Slusallek: Measuring properties of molecular surfaces using ray casting. IPDPS Workshops 2010: 1-7

Lukas Marsalek, Anna Katharina Dehof, Iliyan Georgiev, Hans-Peter Lenhof, Philipp Slusallek, Andreas Hildebrandt: Real-Time Ray Tracing of Complex Molecular Scenes. IV 2010: 239-245

Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof: A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinformatics 25(21): 2787-2794 (2009)

Andreas Keller, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof: Large-scale antibody profiling of human blood sera: The future of molecular diagnosis. Informatik Spektrum 32(4): 332-338 (2009)

Jan Fuhrmann, Alexander Rurainski, Hans-Peter Lenhof, Dirk Neumann: A new method for the gradient-based optimization of molecular complexes. Journal of Computational Chemistry 30(9): 1371-1378 (2009)

Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof: A consensus line search algorithm for molecular potential energy functions. Journal of Computational Chemistry 30(9): 1499-1509 (2009)

Ernst Althaus, Gunnar W. Klau, Oliver Kohlbacher, Hans-Peter Lenhof, Knut Reinert: Integer Linear Programming in Computational Biology. Efficient Algorithms 2009: 199-218

Anna Katharina Dehof, Alexander Rurainski, Hans-Peter Lenhof, Andreas Hildebrandt: Automated Bond Order Assignment as an Optimization Problem. GCB 2009: 201-209

Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof: GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics 9 (2008)

Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof: Electrostatic potentials of proteins in water: a structured continuum approach. Bioinformatics 23(2): 99-103 (2007)

Andreas Keller, Christina Backes, Hans-Peter Lenhof: Computation of significance scores of unweighted Gene Set Enrichment Analyses. BMC Bioinformatics 8 (2007)

Jan Küntzer, Christina Backes, Torsten Blum, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BNDB - The Biochemical Network Database. BMC Bioinformatics 8 (2007)

Christina Backes, Andreas Keller, Jan Küntzer, Benny Kneissl, Nicole Comtesse, Yasser A. Elnakady, Rolf Müller, Eckart Meese, Hans-Peter Lenhof: GeneTrail - advanced gene set enrichment analysis. Nucleic Acids Research 35(Web-Server-Issue): 186-192 (2007)

Andreas Keller, Nicole Comtesse, Nicole Ludwig, Eckart Meese, Hans-Peter Lenhof: SePaCS - a web-based application for classification of seroreactivity profiles. Nucleic Acids Research 35(Web-Server-Issue): 683-687 (2007)

Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher: BALLView: a tool for research and education in molecular modeling. Bioinformatics 22(3): 365-366 (2006)

Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof: A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinformatics 7: 539 (2006)

Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BN++ - A Biological Information System. J. Integrative Bioinformatics 3(2) (2006)

Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: A branch-and-cut algorithm for multiple sequence alignment. Math. Program. 105(2-3): 387-425 (2006)

Christina Backes, Jan Küntzer, Hans-Peter Lenhof, Nicole Comtesse, Eckart Meese: GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. Nucleic Acids Research 33(Web-Server-Issue): 208-213 (2005)

Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans-Peter Lenhof, Christian G. Huber: Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. Computational Proteomics 2005

Ralf Hofestädt, Hans-Peter Lenhof: Molekulare Bioinformatik. it - Information Technology 46(1): 3-4 (2004)

Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A Combinatorial Approach to Protein Docking with Flexible Side Chains. Journal of Computational Biology 9(4): 597-612 (2002)

Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, Knut Reinert: Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics. ECCB 2002: 4-16

Marite Sirava, T. Schäfer, Markus Eiglsperger, Michael Kaufmann, Oliver Kohlbacher, Erich Bornberg-Bauer, Hans-Peter Lenhof: BioMiner - modeling, analyzing, and visualizing biochemical pathways and networks. ECCB 2002: 219-230

Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof: A NMR-spectra-based scoring function for protein docking. RECOMB 2001: 184-192

Oliver Kohlbacher, Hans-Peter Lenhof: BALL-rapid software prototyping in computational molecular biology. Bioinformatics 16(9): 815-824 (2000)

John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron: A polyhedral approach to sequence alignment problems. Discrete Applied Mathematics 104(1-3): 143-186 (2000)

Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb: Simulating synthetic polymer chains in parallel. Future Generation Comp. Syst. 16(5): 513-522 (2000)

Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Molecular Modeling Using the Biochemical Algorithms Library (BALL). ACM Journal of Experimental Algorithmics 5: 16 (2000)

Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller: A combinatorial approach to protein docking with flexible side-chains. RECOMB 2000: 15-24

Hans-Peter Lenhof, Burkhard Morgenstern, Knut Reinert: An exact solution for the segment-to-segment multiple sequence alignment problem. Bioinformatics 15(3): 203-210 (1999)

Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Computational Molecular Biology. German Conference on Bioinformatics 1999: 81-92

Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb: Simulating Synthetic Polymer Chains in Parallel. HPCN Europe 1999: 13-22

Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron: q-gram based database searching using a suffix array (QUASAR). RECOMB 1999: 77-83

Nicolas Boghossian, Oliver Kohlbacher, Hans-Peter Lenhof: BALL: Biochemical Algorithms Library. Algorithm Engineering 1999: 331-345

Hans-Peter Lenhof, Knut Reinert, Martin Vingron: A Polyhedral Approach to RNA Sequence Structure Alignment. Journal of Computational Biology 5(3): 517-530 (1998)

Knut Reinert, Hans-Peter Lenhof, Burkhard Morgenstern: An exact solution for the Segment-to-Segment multiple sequence alignment problem. German Conference on Bioinformatics 1998

Hans-Peter Lenhof, Knut Reinert, Martin Vingron: A polyhedral approach to RNA sequence structure alignment. RECOMB 1998: 153-162

Bernd Jung, Hans-Peter Lenhof, Peter Müller, Christine Rüb: Parallel MD-Simulations of Synthetic Polymers. PPSC 1997

Hans-Peter Lenhof: New contact measures for the protein docking problem. RECOMB 1997: 182-191

Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu: A branch-and-cut algorithm for multiple sequence alignment. RECOMB 1997: 241-250

Hans-Peter Lenhof, Michiel H. M. Smid: Maintaining the Visibility Map of Spheres While Moving the Viewpoint on a Circle at Infinity. Algorithmica 13(3): 301-312 (1995)

Hans-Peter Lenhof, Michiel H. M. Smid: Sequential and parallel algorithms for the k closest pairs problem. Int. J. Comput. Geometry Appl. 5(3): 273-288 (1995)

Amitava Datta, Hans-Peter Lenhof, Christian Schwarz, Michiel H. M. Smid: Static and Dynamic Algorithms for k-Point Clustering Problems. J. Algorithms 19(3): 474-503 (1995)

Hans-Peter Lenhof, Michiel H. M. Smid: Using Persistent Data Structures for Adding Range Restrictions to Searching Problems. ITA 28(1): 25-49 (1994)

Hans-Peter Lenhof, Michiel H. M. Smid: An Animation of a Fixed-Radius All-Nearest-Neighbors Algorithm. Symposium on Computational Geometry 1994: 387

Hans-Peter Lenhof, Michiel H. M. Smid: An optimal construction method for generalized convex layers. Int. J. Comput. Geometry Appl. 3(3): 245-267 (1993)

Amitava Datta, Hans-Peter Lenhof, Christian Schwarz, Michiel H. M. Smid: Static and Dynamic Algorithms for k-Point Clustering Problems. WADS 1993: 265-276

Hans-Peter Lenhof, Michiel H. M. Smid: Enumerating the k Closest Pairs Optimally. FOCS 1992: 380-386

Hans-Peter Lenhof, Michiel H. M. Smid: Maintaining the Visibility Map of Spheres while Moving the Viewpoint on a Circle at Infinity. SWAT 1992: 388-398

Hans-Peter Lenhof, Michiel H. M. Smid: An Optimal Construction Method for Generalized Convex Layers. ISA 1991: 349-363