Jinyan Li

Jinyan Li, Limsoon Wong: Emerging Pattern Based Rules Characterizing Subtypes of Leukemia. Contrast Data Mining 2013: 219-232

Wei Wei, Jinyan Li, Longbing Cao, Jingguang Sun, Chunming Liu, Mu Li: Optimal Allocation of High Dimensional Assets through Canonical Vines. PAKDD (1) 2013: 366-377

Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li: Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinformatics 13: 51 (2012)

Liang Zhao, Limsoon Wong, Lanyuan Lu, Steven C. H. Hoi, Jinyan Li: B-cell epitope prediction through a graph model. BMC Bioinformatics 13(S-17): S20 (2012)

Zhenhua Li, Ying He, Longbing Cao, Limsoon Wong, Jinyan Li: Conservation of water molecules in protein binding interfaces. IJBRA 8(3/4): 228-244 (2012)

Peng Chen, Limsoon Wong, Jinyan Li: Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. IEEE/ACM Trans. Comput. Biology Bioinform. 9(4): 1155-1165 (2012)

Wei Wei, Xuhui Fan, Jinyan Li, Longbing Cao: Model the complex dependence structures of financial variables by using canonical vine. CIKM 2012: 1382-1391

Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee-Keong Kwoh, Limsoon Wong, Jinyan Li: Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinformatics 27(18): 2529-2536 (2011)

Kelvin Sim, Guimei Liu, Vivekanand Gopalkrishnan, Jinyan Li: A case study on financial ratios via cross-graph quasi-bicliques. Inf. Sci. 181(1): 201-216 (2011)

MingJie Tang, Yuanchun Zhou, Jinyan Li, Weihang Wang, Peng Cui, YuanSeng Hou, Ze Luo, Jianhui Li, Fuming Lei, Baoping Yan: Exploring the wild birds' migration data for the disease spread study of H5N1: a clustering and association approach. Knowl. Inf. Syst. 27(2): 227-251 (2011)

Liang Zhao, Limsoon Wong, Jinyan Li: Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. IEEE/ACM Trans. Comput. Biology Bioinform. 8(6): 1483-1494 (2011)

David Lo, Jinyan Li, Limsoon Wong, Siau-Cheng Khoo: Mining Iterative Generators and Representative Rules for Software Specification Discovery. IEEE Trans. Knowl. Data Eng. 23(2): 282-296 (2011)

Gehao Lu, Wei Guo, Jinyan Li, Chaofan Wu: The development approaches and research of uniform rules language designer. ICAL 2011: 362-365

Qian Liu, Jinyan Li: Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective. BMC Bioinformatics 11: 244 (2010)

Peng Chen, Jinyan Li: Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information. BMC Bioinformatics 11: 402 (2010)

Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong: Pattern Space Maintenance for Data Updates and Interactive Mining. Computational Intelligence 26(3): 282-317 (2010)

Scott Mann, Jinyan Li, Yi-Ping Phoebe Chen: Insights into Bacterial Genome Composition through Variable Target GC Content Profiling. Journal of Computational Biology 17(1): 79-96 (2010)

Xiaowen Liu, Jinyan Li, Lusheng Wang: Modeling Protein Interacting Groups by Quasi-Bicliques: Complexity, Algorithm, and Application. IEEE/ACM Trans. Comput. Biology Bioinform. 7(2): 354-364 (2010)

MingJie Tang, Weihang Wang, Yexi Jiang, Yuanchun Zhou, Jinyan Li, Peng Cui, Ying Liu, Baoping Yan: Birds Bring Flues? Mining Frequent and High Weighted Cliques from Birds Migration Networks. DASFAA (2) 2010: 359-369

Jinyan Li, Qian Liu, Tao Zeng: Negative correlations in collaboration: concepts and algorithms. KDD 2010: 463-472

Jinyan Li, Qian Liu: 'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces. Bioinformatics 25(6): 743-750 (2009)

Xinghuo Zeng, Jian Pei, Ke Wang, Jinyan Li: PADS: a simple yet effective pattern-aware dynamic search method for fast maximal frequent pattern mining. Knowl. Inf. Syst. 20(3): 375-391 (2009)

Kelvin Sim, Jinyan Li, Vivekanand Gopalkrishnan, Guimei Liu: Mining maximal quasi-bicliques: Novel algorithm and applications in the stock market and protein networks. Statistical Analysis and Data Mining 2(4): 255-273 (2009)

Guimei Liu, Kelvin Sim, Jinyan Li, Limsoon Wong: Efficient mining of distance-based subspace clusters. Statistical Analysis and Data Mining 2(5-6): 427-444 (2009)

Jinyan Li, Junghwan Kim: Data-Aided Synchronization for MF-TDMA Multi-Carrier Demultiplexer/Demodulator (MCDD). TBC 55(3): 623-632 (2009)

MingJie Tang, Yuanchun Zhou, Peng Cui, Weihang Wang, Jinyan Li, Haiting Zhang, YuanSheng Hou, Baoping Yan: Discovery of Migration Habitats and Routes of Wild Bird Species by Clustering and Association Analysis. ADMA 2009: 288-301

Qian Liu, Yi-Ping Phoebe Chen, Jinyan Li: High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks. BIBM 2009: 111-117

Haiquan Li, Jinyan Li, Xuechun Zhao: Discovery of Protein Interaction Sites. Encyclopedia of Data Warehousing and Mining 2009: 683-688

Guozhu Dong, Jinyan Li: Applications of Emerging Patterns for Microarray Gene Expression Data Analysis. Encyclopedia of Database Systems 2009: 107

Guozhu Dong, Jinyan Li: Emerging Pattern Based Classification. Encyclopedia of Database Systems 2009: 985

Guozhu Dong, Jinyan Li: Emerging Patterns. Encyclopedia of Database Systems 2009: 985-988

Guimei Liu, Jinyan Li, Limsoon Wong: A new concise representation of frequent itemsets using generators and a positive border. Knowl. Inf. Syst. 17(1): 35-56 (2008)

Jinyan Li, Junghwan Kim: Performance Analysis of MF-TDMA Multi-Carrier Demultiplexer/Demodulators (MCDDs) in the Presence of Critical Degrading Factors. TBC 54(3): 371-382 (2008)

Mengling Feng, Jinyan Li, Limsoon Wong, Yap-Peng Tan: Negative Generator Border for Effective Pattern Maintenance. ADMA 2008: 217-228

Suryani Lukman, Kelvin Sim, Jinyan Li, Yi-Ping Phoebe Chen: Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes. APBC 2008: 69-78

Xiaowen Liu, Jinyan Li, Lusheng Wang: Quasi-bicliques: Complexity and Binding Pairs. COCOON 2008: 255-264

Jinyan Li, Kelvin Sim, Guimei Liu, Limsoon Wong: Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-clustering Applications. SDM 2008: 72-83

David Lo, Siau-Cheng Khoo, Jinyan Li: Mining and Ranking Generators of Sequential Patterns. SDM 2008: 553-564

Jinyan Li, Qiang Yang: Strong Compound-Risk Factors: Efficient Discovery Through Emerging Patterns and Contrast Sets. IEEE Transactions on Information Technology in Biomedicine 11(5): 544-552 (2007)

Jinyan Li, Guimei Liu, Haiquan Li, Limsoon Wong: Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms. IEEE Trans. Knowl. Data Eng. 19(12): 1625-1637 (2007)

Guimei Liu, Jinyan Li, Kelvin Sim, Limsoon Wong: Distance Based Subspace Clustering with Flexible Dimension Partitioning. ICDE 2007: 1250-1254

Jinyan Li, Guimei Liu, Limsoon Wong: Mining statistically important equivalence classes and delta-discriminative emerging patterns. KDD 2007: 430-439

Jinyan Li, Xiaohua Hu: Workshop BioDM'07 - An Overview. PAKDD Workshops 2007: 110-111

Mengling Feng, Guozhu Dong, Jinyan Li, Yap-Peng Tan, Limsoon Wong: Evolution and Maintenance of Frequent Pattern Space When Transactions Are Removed. PAKDD 2007: 489-497

Kuralmani Vellaisamy, Jinyan Li: Multidimensional Decision Support Indicator (mDSI) for Time Series Stock Trend Prediction. PAKDD 2007: 841-848

Ben Niu, Qiang Yang, Jinyan Li, Shiu Chi-keung, Sankar K. Pal: Discovering Patterns of DNA Methylation: Rule Mining with Rough Sets and Decision Trees, and Comethylation Analysis. PReMI 2007: 389-397

Takashi Washio, Zhi-Hua Zhou, Joshua Zhexue Huang, Xiaohua Hu, Jinyan Li, Chao Xie, Jieyue He, Deqing Zou, Kuan-Ching Li, Mário M. Freire (Eds.): Emerging Technologies in Knowledge Discovery and Data Mining, PAKDD 2007, International Workshops, Nanjing, China, May 22-25, 2007, Revised Selected Papers. Lecture Notes in Computer Science 4819, Springer 2007, isbn 978-3-540-77016-9

Haiquan Li, Jinyan Li, Limsoon Wong: Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. Bioinformatics 22(8): 989-996 (2006)

Jinyan Li, Haiquan Li, Limsoon Wong, Jian Pei, Guozhu Dong: Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. AAAI 2006: 409-414

Ling Chen, Sourav S. Bhowmick, Jinyan Li: COWES: Clustering Web Users Based on Historical Web Sessions. DASFAA 2006: 541-556

Guimei Liu, Kelvin Sim, Jinyan Li: Efficient Mining of Large Maximal Bicliques. DaWaK 2006: 437-448

Junghwan Kim, Jinyan Li, Jin-ho Jo, Seong-pal Lee: Performance Analysis of MF-TDMA Multi-Carrier Demultiplexer/Demodulators (MCDs) in the Presence of Critical Degrading Factors. GLOBECOM 2006

Kelvin Sim, Jinyan Li, Vivekanand Gopalkrishnan, Guimei Liu: Mining Maximal Quasi-Bicliques to Co-Cluster Stocks and Financial Ratios for Value Investment. ICDM 2006: 1059-1063

Ling Chen, Sourav S. Bhowmick, Jinyan Li: Mining Temporal Indirect Associations. PAKDD 2006: 425-434

Kuralmani Vellaisamy, Jinyan Li: Bayesian Approaches to Ranking Sequential Patterns Interestingness. PRICAI 2006: 241-250

Guimei Liu, Jinyan Li, Limsoon Wong, Wynne Hsu: Positive Borders or Negative Borders: How to Make Lossless Generator Based Representations Concise. SDM 2006

Jinyan Li, Qiang Yang, Ah-Hwee Tan (Eds.): Data Mining for Biomedical Applications, PAKDD 2006 Workshop, BioDM 2006, Singapore, April 9, 2006, Proceedings. Lecture Notes in Computer Science 3916, Springer 2006, isbn 3-540-33104-2

Haiquan Li, Jinyan Li: Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets. Bioinformatics 21(3): 314-324 (2005)

Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong: DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. Bioinformatics 21(5): 671-673 (2005)

Huiqing Liu, Jinyan Li, Limsoon Wong: Use of extreme patient samples for outcome prediction from gene expression data. Bioinformatics 21(16): 3377-3384 (2005)

Jinyan Li, Limsoon Wong, Qiang Yang: Guest Editors' Introduction: Data Mining in Bioinformatics. IEEE Intelligent Systems 20(6): 16-18 (2005)

Jinyan Li, Limsoon Wong: Structural geography of the space of emerging patterns. Intell. Data Anal. 9(6): 567-588 (2005)

Guozhu Dong, Jinyan Li: Mining border descriptions of emerging patterns from dataset pairs. Knowl. Inf. Syst. 8(2): 178-202 (2005)

Jinyan Li, Haiquan Li: Using Fixed Point Theorems to Model the Binding in Protein-Protein Interactions. IEEE Trans. Knowl. Data Eng. 17(8): 1079-1087 (2005)

Jinyan Li, Huiqing Liu, Ling Li: Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia. BIBE 2005: 246-249

Guozhu Dong, Chunyu Jiang, Jian Pei, Jinyan Li, Limsoon Wong: Mining Succinct Systems of Minimal Generators of Formal Concepts. DASFAA 2005: 175-187

Jinyan Li, Haiquan Li, Donny Soh, Limsoon Wong: A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns. PKDD 2005: 146-156

Haiquan Li, Jinyan Li, Limsoon Wong, Mengling Feng, Yap-Peng Tan: Relative risk and odds ratio: a data mining perspective. PODS 2005: 368-377

Jinyan Li, Hwee-Leng Ong: Feature Space Transformation for Better Understanding Biological and Medical Classifications. Journal of Research and Practice in Information Technology 36(3): 131-144 (2004)

Shao-Wu Meng, Zhuo Zhang, Jinyan Li: Twelve C2H2 zinc-finger genes on human chromosome 19 can be each translated into the same type of protein after frameshifts. Bioinformatics 20(1): 1-4 (2004)

Jinyan Li, Thomas Manoukian, Guozhu Dong, Kotagiri Ramamohanarao: Incremental Maintenance on the Border of the Space of Emerging Patterns. Data Min. Knowl. Discov. 9(1): 89-116 (2004)

Huiqing Liu, Hao Han, Jinyan Li, Limsoon Wong: Using amino acid patterns to accurately predict translation initiation sites. In Silico Biology 4 (2004)

Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao, Limsoon Wong: DeEPs: A New Instance-Based Lazy Discovery and Classification System. Machine Learning 54(2): 99-124 (2004)

Jinyan Li, Huiqing Liu, Limsoon Wong: Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. APBC 2004: 67-74

Huiqing Liu, Jinyan Li, Limsoon Wong: Selection of Patient Samples and Genes for Outcome Prediction. CSB 2004: 382-392

Jinyan Li, Kotagiri Ramamohanarao: A Tree-Based Approach to the Discovery of Diagnostic Biomarkers for Ovarian Cancer. PAKDD 2004: 682-691

Haiquan Li, Jinyan Li, Soon-Heng Tan, See-Kiong Ng: Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data. Pacific Symposium on Biocomputing 2004: 312-32

Jinyan Li, Huiqing Liu, James R. Downing, Allen Eng-Juh Yeoh, Limsoon Wong: Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. Bioinformatics 19(1): 71-78 (2003)

Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong: From Informatics to Bioinformatics. APBC 2003: 3-12

Jinyan Li, Hwee-Leng Ong: Feature Space Transformation and Decision Results Interpretation. APBC 2003: 129-137

Jinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong: Discovery of significant rules for classifying cancer diagnosis data. ECCB 2003: 93-102

Jinyan Li, Huiqing Liu: Ensembles of Cascading Trees. ICDM 2003: 585-588

Jinyan Li, See-Kiong Ng, Limsoon Wong: Bioinformatics Adventures in Database Research. ICDT 2003: 31-46

Jinyan Li, Huiqing Liu, Limsoon Wong: Mean-entropy discretized features are effective for classifying high-dimensional biomedical data. BIOKDD 2003: 17-24

Jinyan Li, Limsoon Wong: Using Rules to Analyse Bio-medical Data: A Comparison between C4.5 and PCL. WAIM 2003: 254-265

Jinyan Li, Limsoon Wong: Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. Bioinformatics 18(5): 725-734 (2002)

Jinyan Li, Limsoon Wong: Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns . Bioinformatics 18(10): 1406-1407 (2002)

Jinyan Li, Limsoon Wong: Solving the Fragmentation Problem of Decision Trees by Discovering Boundary Emerging Patterns. ICDM 2002: 653-656

Jinyan Li, Limsoon Wong: Geography of Differences between Two Classes of Data. PKDD 2002: 325-337

Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao: Making Use of the Most Expressive Jumping Emerging Patterns for Classification. Knowl. Inf. Syst. 3(2): 131-145 (2001)

Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong: Combining the Strength of Pattern Frequency and Distance for Classification. PAKDD 2001: 455-466

Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong: Emerging Patterns and Classification. ASIAN 2000: 15-32

Jinyan Li, Kotagiri Ramamohanarao, Guozhu Dong: The Space of Jumping Emerging Patterns and Its Incremental Maintenance Algorithms. ICML 2000: 551-558

Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao: Making Use of the Most Expressive Jumping Emerging Patterns for Classification. PAKDD 2000: 220-232

Jinyan Li, Guozhu Dong, Kotagiri Ramamohanarao: Instance-Based Classification by Emerging Patterns. PKDD 2000: 191-200

Guozhu Dong, Xiuzhen Zhang, Limsoon Wong, Jinyan Li: CAEP: Classification by Aggregating Emerging Patterns. Discovery Science 1999: 30-42

Guozhu Dong, Jinyan Li: Efficient Mining of Emerging Patterns: Discovering Trends and Differences. KDD 1999: 43-52

Jinyan Li, Xiuzhen Zhang, Guozhu Dong, Kotagiri Ramamohanarao, Qun Sun: Efficient Mining of High Confidience Association Rules without Support Thresholds. PKDD 1999: 406-411

Guozhu Dong, Jinyan Li: Interestingness of Discovered Association Rules in Terms of Neighborhood-Based Unexpectedness. PAKDD 1998: 72-86