Shuai Cheng Li

Shuai Cheng Li: The Difficulty Of Protein Structure Alignment Under The RMSD. Algorithms for Molecular Biology 8: 1 (2013)

Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li: Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms for Molecular Biology 8: 5 (2013)

Daniel Holtby, Shuai Cheng Li, Ming Li: LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins. Journal of Computational Biology 20(3): 212-223 (2013)

Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang: Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. RECOMB 2013: 58-74

Fei Guo, Shuai Cheng Li, Lusheng Wang, Daming Zhu: Protein-protein binding site identification by enumerating the configurations. BMC Bioinformatics 13: 158 (2012)

Shuai Cheng Li, Dongbo Bu, Ming Li: Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE/ACM Trans. Comput. Biology Bioinform. 9(1): 240-248 (2012)

Shuai Cheng Li, Dongbo Bu, Ming Li: Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE/ACM Trans. Comput. Biology Bioinform. 9(3): 765-773 (2012)

Yen Kaow Ng, Hirotaka Ono, Ling Ge, Shuai Cheng Li: Finding Longest Common Segments in Protein Structures in Nearly Linear Time. CPM 2012: 334-348

Fei Guo, Shuai Cheng Li, Lusheng Wang: P-Binder: A System for the Protein-Protein Binding Sites Identification. ISBRA 2012: 127-138

Daniel Holtby, Shuai Cheng Li, Ming Li: LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins. RECOMB 2012: 113-126

Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li: How Accurately Can We Model Protein Structures with Dihedral Angles? WABI 2012: 274-287

Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li: Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinformatics and Computational Biology 9(1): 15-41 (2011)

Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li: Finding Nearly Optimal GDT Scores. Journal of Computational Biology 18(5): 693-704 (2011)

Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin: Pedigree Reconstruction Using Identity by Descent. Journal of Computational Biology 18(11): 1481-1493 (2011)

Shuai Cheng Li, Yen Kaow Ng: On protein structure alignment under distance constraint. Theor. Comput. Sci. 412(32): 4187-4199 (2011)

Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin: Pedigree Reconstruction Using Identity by Descent. RECOMB 2011: 136-152

Shuai Cheng Li, Yen Kaow Ng: Calibur: a tool for clustering large numbers of protein decoys. BMC Bioinformatics 11: 25 (2010)

Yuzhong Zhao, Babak Alipanahi, Shuai Cheng Li, Ming Li: Protein Secondary Structure Prediction Using NMR Chemical Shift Data. J. Bioinformatics and Computational Biology 8(5): 867-884 (2010)

Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li: Predicting Local Quality of a Sequence-Structure Alignment. J. Bioinformatics and Computational Biology 7(5): 789-810 (2009)

Shuai Cheng Li, Ming Li: On two open problems of 2-interval patterns. Theor. Comput. Sci. 410(24-25): 2410-2423 (2009)

Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu: Finding compact structural motifs. Theor. Comput. Sci. 410(30-32): 2834-2839 (2009)

Shuai Cheng Li, Yen Kaow Ng: On Protein Structure Alignment under Distance Constraint. ISAAC 2009: 65-76

Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang: A PTAS For The k-Consensus Structures Problem Under Squared Euclidean Distance. Algorithms 1(2): 43-51 (2008)

Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li: Finding Largest Well-Predicted Subset of Protein Structure Models. CPM 2008: 44-55

Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang: A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance. FAW 2008: 35-44

Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li: Designing succinct structural alphabets. ISMB 2008: 182-189

Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu: Finding Compact Structural Motifs. CPM 2007: 142-149

Xin Gao, Shuai Cheng Li, Yinan Lu: New Algorithms for the Spaced Seeds. FAW 2007: 50-61

Shuai Cheng Li: Faster Algorithms for Finding Missing Patterns. CATS 2006: 107-111

Shuai Cheng Li, Ming Li: On the Complexity of the Crossing Contact Map Pattern Matching Problem. WABI 2006: 231-241

Xia Cao, Shuai Cheng Li, Anthony K. H. Tung: Indexing DNA Sequences Using q-Grams. DASFAA 2005: 4-16

Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K. H. Tung: Piers: An Efficient Model for Similarity Search in DNA Sequence Databases. SIGMOD Record 33(2): 39-44 (2004)

Shuai Cheng Li, Hon Wai Leong, Steven K. Quek: New Approximation Algorithms for Some Dynamic Storage Allocation Problems. COCOON 2004: 339-348

Xia Cao, Anthony K. H. Tung, Beng Chin Ooi, Kian-Lee Tan, Shuai Cheng Li: String Join Using Precedence Count Matrix. SSDBM 2004: 345-348