Weizhong Li

Zhengwei Zhu, Beifang Niu, Jing Chen, Sitao Wu, Shulei Sun, Weizhong Li: MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data. Bioinformatics 29(1): 122-123 (2013)

Weizhong Li, Limin Fu, Beifang Niu, Sitao Wu, John C. Wooley: Ultrafast clustering algorithms for metagenomic sequence analysis. Briefings in Bioinformatics 13(6): 656-668 (2012)

Weizhong Li, Hamish McWilliam, Mickael Goujon, Andrew Cowley, Rodrigo Lopez, William R. Pearson: PSI-Search: iterative HOE-reduced profile SSEARCH searching. Bioinformatics 28(12): 1650-1651 (2012)

Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li: CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 28(23): 3150-3152 (2012)

Ilkay Altintas, Jianwu Wang, Daniel Crawl, Weizhong Li: Challenges and approaches for distributed workflow-driven analysis of large-scale biological data: vision paper. EDBT/ICDT Workshops 2012: 73-78

Beifang Niu, Zhengwei Zhu, Limin Fu, Sitao Wu, Weizhong Li: FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes. Bioinformatics 27(12): 1704-1705 (2011)

Jing Cui, Weizhong Li, Wei-Haur Lam: Numerical investigation on drag reduction with superhydrophobic surfaces by lattice-Boltzmann method. Computers & Mathematics with Applications 61(12): 3678-3689 (2011)

Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel W. Lin, Steven Peltier, Karen Stocks, Eric E. Allen, Mark H. Ellisman, Jeffrey S. Grethe, John C. Wooley: Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Research 39(Database-Issue): 546-551 (2011)

Ying Huang, Beifang Niu, Ying Gao, Limin Fu, Weizhong Li: CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26(5): 680-682 (2010)

Beifang Niu, Limin Fu, Shulei Sun, Weizhong Li: Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 11: 187 (2010)

Weizhong Li, Hamish McWilliam, Ana Richart de la Torre, Adam Grodowski, Irina Benediktovich, Mickael Goujon, Stephane Nauche, Rodrigo Lopez: Non-redundant patent sequence databases with value-added annotations at two levels. Nucleic Acids Research 38(Database-Issue): 52-56 (2010)

Mickael Goujon, Hamish McWilliam, Weizhong Li, Franck Valentin, Silvano Squizzato, Juri Paern, Rodrigo Lopez: A new bioinformatics analysis tools framework at EMBL-EBI. Nucleic Acids Research 38(Web-Server-Issue): 695-699 (2010)

Kyle Ellrott, Lukasz Jaroszewski, Weizhong Li, John C. Wooley, Adam Godzik: Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families. PLoS Computational Biology 6(6) (2010)

Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman: CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. SERVICES 2010: 352-359

Ying Huang, Paul Gilna, Weizhong Li: Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics 25(10): 1338-1340 (2009)

Weizhong Li: Analysis and comparison of very large metagenomes with fast clustering and functional annotation. BMC Bioinformatics 10: 359 (2009)

Hamish McWilliam, Franck Valentin, Mickael Goujon, Weizhong Li, Menaka Narayanasamy, Jenny Martin, Teresa Miyar, Rodrigo Lopez: Web services at the European Bioinformatics Institute-2009. Nucleic Acids Research 37(Web-Server-Issue): 6-10 (2009)

Weizhong Li, Yanping Wen: The GIS-Based Information System of Geological Hazard Reconnaissance. CSIE (2) 2009: 394-397

Shibu Yooseph, Weizhong Li, Granger G. Sutton: Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering. BMC Bioinformatics 9 (2008)

Weizhong Li, Adam Godzik: VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics 22(7): 887-888 (2006)

Weizhong Li, Adam Godzik: Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22(13): 1658-1659 (2006)

Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik: FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Research 33(Web-Server-Issue): 284-288 (2005)

Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, Adam Godzik: A segment alignment approach to protein comparison. Bioinformatics 19(6): 742-749 (2003)

Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 18(1): 77-82 (2002)

Weizhong Li, Lukasz Jaroszewski, Adam Godzik: Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17(3): 282-283 (2001)

Weizhong Li, Frederic Pio, Krzysztof Pawlowski, Adam Godzik: Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics 16(12): 1105-1110 (2000)