Heshan Lin

Kenneth S. Lee, Heshan Lin, Wu-chun Feng: Performance characterization of data-intensive kernels on AMD Fusion architectures. Computer Science - R&D 28(2-3): 175-184 (2013)

Heshan Lin, Xiaosong Ma, Wu-chun Feng: Reliable MapReduce computing on opportunistic resources. Cluster Computing 15(2): 145-161 (2012)

Shucai Xiao, Pavan Balaji, James Dinan, Qian Zhu, Rajeev Thakur, Susan Coghlan, Heshan Lin, Gaojin Wen, Jue Hong, Wu-chun Feng: Transparent Accelerator Migration in a Virtualized GPU Environment. CCGRID 2012: 124-131

Wu-chun Feng, Heshan Lin, Thomas Scogland, Jing Zhang: OpenCL and the 13 dwarfs: a work in progress. ICPE 2012: 291-294

Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova: Coordinating Computation and I/O in Massively Parallel Sequence Search. IEEE Trans. Parallel Distrib. Syst. 22(4): 529-543 (2011)

Marwa Elteir, Heshan Lin, Wu-chun Feng: Performance Characterization and Optimization of Atomic Operations on AMD GPUs. CLUSTER 2011: 234-243

Chao-Chin Wu, Jenn-Yang Ke, Heshan Lin, Wu-chun Feng: Optimizing Dynamic Programming on Graphics Processing Units via Adaptive Thread-Level Parallelism. ICPADS 2011: 96-103

Marwa Elteir, Heshan Lin, Wu-chun Feng, Tom Scogland: StreamMR: An Optimized MapReduce Framework for AMD GPUs. ICPADS 2011: 364-371

Shucai Xiao, Heshan Lin, Wu-chun Feng: Accelerating Protein Sequence Search in a Heterogeneous Computing System. IPDPS 2011: 1212-1222

Karl Pereira, Peter Athanas, Heshan Lin, Wu Feng: Spectral Method Characterization on FPGA and GPU Accelerators. ReConFig 2011: 487-492

Kenneth S. Lee, Heshan Lin, Wu-chun Feng: Poster: characterizing the impact of memory-access techniques on AMD fusion. SC Companion 2011: 75-76

Tae-Hyuk Ahn, Damian Dechev, Heshan Lin, Helgi Adalsteinsson, Curtis L. Janssen: Evaluating Performance Optimizations of Large-scale Genomic Sequence Search Applications using SST/macro. SIMULTECH 2011: 65-73

Wu-chun Feng, Wu-chun Feng, Heshan Lin: Homology to Sequence Alignment, From. Encyclopedia of Parallel Computing 2011: 834-844

Pavan Balaji, Wu-chun Feng, Heshan Lin, Jeremy S. Archuleta, Satoshi Matsuoka, Andrew S. Warren, João Carlos Setubal, Ewing L. Lusk, Rajeev Thakur, Ian T. Foster, Daniel S. Katz, Shantenu Jha, K. Shinpaugh, Susan Coghlan, Daniel A. Reed: Global-scale distributed I/O with ParaMEDIC. Concurrency and Computation: Practice and Experience 22(16): 2266-2281 (2010)

Thomas Scogland, Heshan Lin, Wu-chun Feng: A first look at integrated GPUs for green high-performance computing. Computer Science - R&D 25(3-4): 125-134 (2010)

Heshan Lin, Xiaosong Ma, Jeremy S. Archuleta, Wu-chun Feng, Mark K. Gardner, Zhe Zhang: MOON: MapReduce On Opportunistic eNvironments. HPDC 2010: 95-106

Marwa Elteir, Heshan Lin, Wu-chun Feng: Enhancing MapReduce via Asynchronous Data Processing. ICPADS 2010: 397-405

Wu-chun Feng, Heshan Lin: The Green500 List: Year two. IPDPS Workshops 2010: 1-8

Pavan Balaji, Wu-chun Feng, Heshan Lin: Semantic-based distributed i/o with the paramedic framework. HPDC 2008: 175-184

Pavan Balaji, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Rajkumar Kettimuthu, Rajeev Thakur, Xiaosong Ma: Semantics-based distributed I/O for mpiBLAST. PPOPP 2008: 293-294

Heshan Lin, Pavan Balaji, Ruth Poole, Carlos P. Sosa, Xiaosong Ma, Wu-chun Feng: Massively parallel genomic sequence search on the Blue Gene/P architecture. SC 2008: 33

Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova: Adaptive Request Scheduling for Parallel Scientific Web Services. SSDBM 2008: 276-294

Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, Karl Jiang, Heshan Lin, Amanda E. Peters, Wu-chun Feng: Parallel genomic sequence-search on a massively parallel system. Conf. Computing Frontiers 2007: 59-68

Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma, Alok N. Choudhary: Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim. HPDC 2006: 229-240

Mark K. Gardner, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Xiaosong Ma: Grid applications - Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications. SC 2006: 104

Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova: Efficient Data Access for Parallel BLAST. IPDPS 2005