Paul Lu

Shayan Pooya, Paul Lu, M. H. MacGregor: Structured Message Transport. IPCCC 2012: 432-439

Yang Wang, Paul Lu: Dataflow detection and applications to workflow scheduling. Concurrency and Computation: Practice and Experience 23(11): 1261-1283 (2011)

Adam Wolfe Gordon, Paul Lu: Elastic Phoenix: Malleable MapReduce for Shared-Memory Systems. NPC 2011: 1-16

Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart: PROSESS: a protein structure evaluation suite and server. Nucleic Acids Research 38(Web-Server-Issue): 633-640 (2010)

Erkan Unal, Paul Lu: Virtual Application Appliances in Practice: Basic Mechanisms and Overheads. HPCC 2010: 213-222

Babak Bostan, Russell Greiner, Duane Szafron, Paul Lu: Predicting homologous signaling pathways using machine learning. Bioinformatics 25(22): 2913-2920 (2009)

Mark V. Berjanskii, Peter Tang, Jack Liang, Joseph A. Cruz, Jianjun Zhou, You Zhou, Edward Bassett, Cam Macdonell, Paul Lu, Guohui Lin, David S. Wishart: GeNMR: a web server for rapid NMR-based protein structure determination. Nucleic Acids Research 37(Web-Server-Issue): 670-677 (2009)

Alona Fyshe, Yifeng Liu, Duane Szafron, Russell Greiner, Paul Lu: Improving subcellular localization prediction using text classification and the gene ontology. Bioinformatics 24(21): 2512-2517 (2008)

Paul Lu: The need for diversity in HPC: HPC'08 keynote address. SpringSim 2008: 348

Meng Ding, Paul Lu, Juefu Wang, Mauricio D. Sacchi: Design, Implementation, and Evaluation of Trellis-SDP for File-Level Data Parallelism. ICPP 2007: 31

Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane Szafron, Kevin Charter, Ian Parsons: FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment. Algorithmica 45(3): 337-375 (2006)

Paul Lu, Michael Closson, Cam Macdonell, Paul Nalos, Danny Ngo, Morgan Kan, Mark Lee: The Trellis security infrastructure for overlay metacomputers and bridged distributed file systems. J. Parallel Distrib. Comput. 66(9): 1181-1188 (2006)

Luca Pireddu, Duane Szafron, Paul Lu, Russell Greiner: The Path-A metabolic pathway prediction web server. Nucleic Acids Research 34(Web-Server-Issue): 714-719 (2006)

Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Cam Macdonell, John Anvik: Visual Explanation of Evidence with Additive Classifiers. AAAI 2006: 1822-1829

Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, Nicholas Lamb: PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. Nucleic Acids Research 33(Database-Issue): 147-153 (2005)

Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart: BASys: a web server for automated bacterial genome annotation. Nucleic Acids Research 33(Web-Server-Issue): 455-459 (2005)

Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu: The Proteome Analyst Suite of Automated Function Prediction Tools. AAAI 2005: 1698-1699

Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart: Pathway Analyst--Automated Metabolic Pathway Prediction. CIBCB 2005: 243-250

Roman Eisner, Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner: Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology. CIBCB 2005: 354-363

Jonathan Schaeffer, Yngvi Björnsson, Neil Burch, Akihiro Kishimoto, Martin Müller, Robert Lake, Paul Lu, Steve Sutphen: Solving Checkers. IJCAI 2005: 292-297

Yang Wang, Paul Lu: Using Dataflow Information to Improve Inter-Workflow Instance Concurrency. PDCAT 2005: 1078-1082

Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner: Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20(4): 547-556 (2004)

Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis: Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Research 32(Web-Server-Issue): 365-371 (2004)

Morgan Kan, Danny Ngo, Mark Lee, Paul Lu, Nolan Bard, Michael Closson, Meng Ding, Mark Goldenberg, Nicholas Lamb, Yang Wang, Ron Senda, Edmund Sumbar: The Trellis Security Infrastructure: A Layered Approach to Overlay Metacomputers . HPCS 2004: 109-117

Nicholas Lamb, Paul Lu, Alona Fyshe: Trellis Driver: Distributing a Java Workflow across a Network of Workstations. ICPP Workshops 2004: 198-205

Meng Ding, Paul Lu: Trellis-SDP: A Simple Data-Parallel Programming Interface. ICPP Workshops 2004: 498-505

Jonathan Schaeffer, Yngvi Björnsson, Neil Burch, Robert Lake, Paul Lu, Steve Sutphen: Building the Checkers 10-piece Endgame Databases. ACG 2003: 193-210

Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane Szafron, Kevin Charter, Ian Parsons: FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment. ICPP 2003: 48-

Ernesto Novillo, Paul Lu: A Case Study of Selected SPLASH-2 Applications and the SBT Debugging Tool. IPDPS 2003: 290

Mark Goldenberg, Paul Lu, Jonathan Schaeffer: TrellisDAG: A System for Structured DAG Scheduling. JSSPP 2003: 21-43

Matthew McNaughton, Paul Lu, Jonathan Schaeffer, Duane Szafron: Memory-Efficient A* Heuristics for Multiple Sequence Alignment. AAAI/IAAI 2002: 737-743

Jeff Siegel, Paul Lu: User-Level Remote Data Access in Overlay Metacomputers. CLUSTER 2002: 480-483

Christopher Pinchak, Paul Lu, Mark Goldenberg: Practical Heterogeneous Placeholder Scheduling in Overlay Metacomputers: Early Experiences. JSSPP 2002: 205-228

Paul Lu: Integrating Bulk-Data Transfer into the Aurora Distributed Shared Data System. J. Parallel Distrib. Comput. 61(11): 1609-1632 (2001)

Christopher Dutchyn, Paul Lu, Duane Szafron, Steven Bromling, Wade Holst: Multi-Dispatch in the Java Virtual Machine: Design and Implementation. COOTS 2001: 77-92

Victor Salamon, Paul Lu, Ben Watson, Dima Brodsky, Dave Gomboc: A Case Study of Improving Memory Locality in Polygonal Model Simplification: Metrics and Performance. HiPC 2001: 137-150

Osmar R. Zaïane, Mohammad El-Hajj, Paul Lu: Fast Parallel Association Rule Mining without Candidacy Generation. ICDM 2001: 665-668

Ernesto Novillo, Paul Lu: On-Line Debugging and Performance Monitoring with Barriers. IPDPS 2001: 24

Paul Lu: Implementing scoped behavior for flexible distributed data sharing. IEEE Concurrency 8(3): 63-73 (2000)

Christopher Dutchyn, Paul Lu, Duane Szafron, Steven Bromling, Wade Holst: Multi-dispatch in the Java Virtual Machine (poster session): design and implementation. OOPSLA Addendum 2000: 115-116

Paul Lu: Implementing Optimized Distributed Data Sharing Using Scoped Behavior and a Class Library. COOTS 1997: 145-158

Paul Lu: Aurora: Scoped Behavior for Per-Context Optimized Distributed Data Sharing. IPPS 1997: 467-473

Jonathan Schaeffer, Robert Lake, Paul Lu, Martin Bryant: CHINOOK: The World Man-Machine Checkers Champion. AI Magazine 17(1): 21-29 (1996)

Jonathan Schaeffer, Norman Treloar, Paul Lu, Robert Lake: Man Versus Machine for the World Checkers Championship. AI Magazine 14(2): 28-35 (1993)

Xiaobo Li, Paul Lu, Jonathan Schaeffer, John Shillington, Pok Sze Wong, Hanmao Shi: On the Versatility of Parallel Sorting by Regular Sampling. Parallel Computing 19(10): 1079-1103 (1993)

Jonathan Schaeffer, Joseph C. Culberson, Norman Treloar, Brent Knight, Paul Lu, Duane Szafron: A World Championship Caliber Checkers Program. Artif. Intell. 53(2-3): 273-289 (1992)

Duane Szafron, Jonathan Schaeffer, Pok Sze Wong, Enoch Chan, Paul Lu, Carol Smith: The Enterprise Distributed Programming Model. Programming Environments for Parallel Computing 1992: 67-76