Yves A. Lussier

Philip R. O. Payne, Taylor R. Pressler, Indra Neil Sarkar, Yves A. Lussier: People, organizational, and leadership factors impacting informatics support for clinical and translational research. BMC Med. Inf. & Decision Making 13: 20 (2013)

Yves A. Lussier, Walter M. Stadler, James L. Chen: Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. JAMIA 19(2): 156-160 (2012)

Haiquan Li, Younghee Lee, James L. Chen, Ellen Rebman, Jianrong Li, Yves A. Lussier: Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. JAMIA 19(2): 295-305 (2012)

Kelly Regan, Kanix Wang, Emily Doughty, Haiquan Li, Jianrong Li, Younghee Lee, Maricel G. Kann, Yves A. Lussier: Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. JAMIA 19(2): 306-316 (2012)

Yves A. Lussier, Haiquan Li: Breakthroughs in genomics data integration for predicting clinical outcome. Journal of Biomedical Informatics 45(6): 1199-1201 (2012)

Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jianrong Li, Tanguy Y. Seiwert, Ezra E. W. Cohen, H. Rosie Xing, Yves A. Lussier: Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer. PLoS Computational Biology 8(1) (2012)

Xinan Yang, Jianrong Li, Younghee Lee, Yves A. Lussier: GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. Bioinformatics 27(10): 1444-1446 (2011)

Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado: Translational bioinformatics: linking knowledge across biological and clinical realms. JAMIA 18(4): 354-357 (2011)

James L. Chen, Jianrong Li, Walter M. Stadler, Yves A. Lussier: Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. JAMIA 18(4): 392-402 (2011)

Kyle Chard, Michael Russell, Yves A. Lussier, Eneida A. Mendonça, Jonathan C. Silverstein: Scalability and cost of a cloud-based approach to medical NLP. CBMS 2011: 1-6

Xinan Yang, Younghee Lee, Yong Huang, James L. Chen, H. Rosie Xing, Yves A. Lussier: Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models. BMC Bioinformatics 11(S-9): S11 (2010)

Yves A. Lussier, Atul J. Butte, Lawrence Hunter: Current methodologies for translational bioinformatics. Journal of Biomedical Informatics 43(3): 355-357 (2010)

Xinan Yang, Yong Huang, Matthew G. Crowson, Jianrong Li, Michael L. Maitland, Yves A. Lussier: Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. Journal of Biomedical Informatics 43(3): 376-384 (2010)

James L. Chen, Lee T. Sam, Yong Huang, Younghee Lee, Jianrong Li, Yang Liu, H. Rosie Xing, Yves A. Lussier: Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. Journal of Biomedical Informatics 43(3): 385-396 (2010)

Younghee Lee, Xinan Yang, Yong Huang, Hanli Fan, Qingbei Zhang, Youngfei Wu, Jianrong Li, Rifat Hasina, Chao Cheng, Mark W. Lingen, Mark B. Gerstein, Ralph R. Weichselbaum, H. Rosie Xing, Yves A. Lussier: Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis. PLoS Computational Biology 6(4) (2010)

Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya: Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinformatics 10(S-2) (2009)

Yang Liu, Lee T. Sam, Jianrong Li, Yves A. Lussier: Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays. BMC Bioinformatics 10(S-2) (2009)

Lee T. Sam, Eneida A. Mendonça, Jianrong Li, Judith A. Blake, Carol Friedman, Yves A. Lussier: PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics 10(S-2) (2009)

Yves A. Lussier, Indra Neil Sarkar: Selected proceedings of the 2009 Summit on Translational Bioinformatics. BMC Bioinformatics 10(S-9): 0 (2009)

Xinan Yang, Yong Huang, James L. Chen, Jianming Xie, Xiao Sun, Yves A. Lussier: Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. BMC Bioinformatics 10(S-9): 6 (2009)

Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann: Session Introduction. Pacific Symposium on Biocomputing 2009: 464-466

Yves A. Lussier, James L. Chen: Clinical Ontologies. Encyclopedia of Database Systems 2009: 360-363

Yves A. Lussier, Matthew G. Crowson: Interoperation of NLP-based Systems with Clinical Databases. Encyclopedia of Database Systems 2009: 1564-1566

Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann: Session Introduction. Pacific Symposium on Biocomputing 2008: 228-230

James L. Chen, Yang Liu, Lee T. Sam, Jianrong Li, Yves A. Lussier: Evaluation of high-throughput functional categorization of human disease genes. BMC Bioinformatics 8(S-3) (2007)

Yves A. Lussier, Rose Williams, Jianrong Li, Srikant Jalan, Tara Borlawsky, Edie Stern, Inderpal Kohli: Partitioning knowledge bases between advanced notification and clinical decision support systems. Decision Support Systems 43(4): 1274-1286 (2007)

Michael E. Bales, Yves A. Lussier, Stephen B. Johnson: Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. JAMIA 14(6): 788-797 (2007)

P. Karina Tulipano, Ying Tao, William S. Millar, Pat Zanzonico, Katherine Kolbert, Hua Xu, Hong Yu, Lifeng Chen, Yves A. Lussier, Carol Friedman: Natural language processing and visualization in the molecular imaging domain. Journal of Biomedical Informatics 40(3): 270-281 (2007)

Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier: Information theory applied to the sparse gene ontology annotation network to predict novel gene function. ISMB/ECCB (Supplement of Bioinformatics) 2007: 529-538

Lee T. Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves A. Lussier: Discovery of Protein Interaction Networks Shared by Diseases. Pacific Symposium on Biocomputing 2007: 76-87

Carol Friedman, Tara Borlawsky, Lyudmila Shagina, H. Rosie Xing, Yves A. Lussier: Bio-Ontology and text: bridging the modeling gap. Bioinformatics 22(19): 2421-2429 (2006)

Li Zhou, Ying Tao, James J. Cimino, Elizabeth S. Chen, Hongfang Liu, Yves A. Lussier, George Hripcsak, Carol Friedman: Terminology model discovery using natural language processing and visualization techniques. : 626-636 (2006)

Yang Liu, Jianrong Li, Lee T. Sam, Chern-Sing Goh, Mark Gerstein, Yves A. Lussier: An Integrative Genomic Approach to Uncover Molecular Mechanisms of Prokaryotic Traits. PLoS Computational Biology 2(11) (2006)

Ying Tao, Chintan Patel, Carol Friedman, Yves A. Lussier: Issues in Representing Biological and Clinical Phenotypes Using the Formal Models. KR-MED 2006

Yves A. Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman: PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing. Pacific Symposium on Biocomputing 2006: 64-75

Robert Stevens, Olivier Bodenreider, Yves A. Lussier: Session Introduction. Pacific Symposium on Biocomputing 2006: 112-115

Ying Tao, Carol Friedman, Yves A. Lussier: Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics 21(8): 1659-1667 (2005)

Rose Williams, Srikant Jalan, Edie Stern, Yves A. Lussier: Cascading Policies Provide Fault Tolerance for Pervasive Clinical Communications. PerCom Workshops 2005: 209-212

M. N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier: GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. Pacific Symposium on Biocomputing 2005: 116-127

Carol Friedman, Lyudmila Shagina, Yves A. Lussier, George Hripcsak: Research Paper: Automated Encoding of Clinical Documents Based on Natural Language Processing. JAMIA 11(5): 392-402 (2004)

Yves A. Lussier, Jianrong Li: Terminological Mapping for High Throughput Comparative Biology of Phenotypes. Pacific Symposium on Biocomputing 2004: 202-213

Indra Neil Sarkar, M. N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier: Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. Pacific Symposium on Biocomputing 2003: 427-450

Hongfang Liu, Yves A. Lussier, Carol Friedman: Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method. Journal of Biomedical Informatics 34(4): 249-261 (2001)