Raghu Machiraju

Vikram Kalluru, Raghu Machiraju, Kun Huang: Identify condition-specific gene co-expression networks. I. J. Computational Biology and Drug Design 6(1/2): 50-59 (2013)

Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang: A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinformatics 13(S-2): S2 (2012)

Thierry Pécot, Shantanu Singh, Enrico Caserta, Kun Huang, Raghu Machiraju, Gustavo Leone: Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. ISBI 2012: 170-173

Firdaus Janoos, Raghu Machiraju, Shantanu Singh, István Ákos Mórocz: Spatio-temporal models of mental processes from fMRI. NeuroImage 57(2): 362-377 (2011)

Frank van Ham, Raghu Machiraju, Klaus Mueller, Gerik Scheuermann, Chris Weaver: Message from the Paper Chairs and Guest Editors. IEEE Trans. Vis. Comput. Graph. 17(12): x (2011)

Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Gustavo Leone, Jens Rittscher, Raghu Machiraju: Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning. IPMI 2011: 398-410

Firdaus Janoos, Shantanu Singh, Raghu Machiraju, William M. Wells III, István Ákos Mórocz: State-Space Models of Mental Processes from fMRI. IPMI 2011: 588-599

M. Okan Irfanoglu, Lindsay Walker, Steffen Sammet, Carlo Pierpaoli, Raghu Machiraju: Susceptibility Distortion Correction for Echo Planar Images with Non-uniform B-Spline Grid Sampling: A Diffusion Tensor Image Study. MICCAI (2) 2011: 174-181

Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju: Non-parametric Population Analysis of Cellular Phenotypes. MICCAI (2) 2011: 343-351

Hans-Christian Hege, David H. Laidlaw, Raghu Machiraju: Guest Editors' Introduction: Special Section on Volume Graphics and Point-Based Graphics. IEEE Trans. Vis. Comput. Graph. 16(4): 531-532 (2010)

Jean-Daniel Fekete, Frank van Ham, Raghu Machiraju, Torsten Möller, Hanspeter Pfister: Preface. IEEE Trans. Vis. Comput. Graph. 16(6) (2010)

Kishore Mosaliganti, Firdaus Janoos, Arnaud Gelas, Ramil Noche, Nikolaus Obholzer, Raghu Machiraju, Sean Megason: Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images. ISBI 2010: 588-591

Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, Simon K. Warfield, István Ákos Mórocz: Measuring effects of latency in brain activity with FMRI. ISBI 2010: 1141-1144

Shantanu Singh, S. Raman, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Jens Rittscher, Raghu Machiraju: Analysis of spatial variation of nuclear morphology in tissue microenvironments. ISBI 2010: 1293-1296

Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, István Ákos Mórocz: Unsupervised Learning of Brain States from fMRI Data. MICCAI (2) 2010: 201-208

Dirk Bartz, Charl P. Botha, Joachim Hornegger, Raghu Machiraju, Alexander Wiebel, Bernhard Preim (Eds.): Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine, VCBM 2010, Leipzig, Germany, 2010. Eurographics Association 2010, isbn 978-3-905674-28-6

Firdaus Janoos, Boonthanome Nouanesengsy, Raghu Machiraju, Han-Wei Shen, Steffen Sammet, Michael V. Knopp, István Ákos Mórocz: Visual Analysis of Brain Activity from fMRI Data. Comput. Graph. Forum 28(3): 903-910 (2009)

Kishore Mosaliganti, Firdaus Janoos, M. Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel H. Saltz, Gustavo Leone, Michael C. Ostrowski: Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Analysis 13(1): 156-166 (2009)

Firdaus Janoos, Kishore Mosaliganti, Xiaoyin Xu, Raghu Machiraju, Kun Huang, Stephen T. C. Wong: Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging. Medical Image Analysis 13(1): 167-179 (2009)

M. Okan Irfanoglu, Cheng Guan Koay, Sinisa Pajevic, Raghu Machiraju, Peter J. Basser: Diffusion Tensor Field Registration in the Presence of Uncertainty. MICCAI (1) 2009: 181-189

Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Gustavo Leone: Geometry-driven Visualization of Microscopic Structures in Biology. Comput. Graph. Forum 27(3): 871-878 (2008)

Firdaus Janoos, Boonthanome Nouanesengsy, Xiaoyin Xu, Raghu Machiraju, Stephen T. C. Wong: Classification and Uncertainty Visualization of Dendritic Spines from Optical Microscopy Imaging. Comput. Graph. Forum 27(3): 879-886 (2008)

Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang: An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. Journal of Biomedical Informatics 41(6): 863-873 (2008)

Kishore Mosaliganti, Lee A. D. Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz: Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. 14(4): 863-876 (2008)

Bela Soni, David Thompson, Raghu Machiraju: Visualizing Particle/Flow Structure Interactions in the Small Bronchial Tubes. IEEE Trans. Vis. Comput. Graph. 14(6): 1412-1427 (2008)

Shantanu Singh, Kishore Mosaliganti, Raghu Machiraju: Microstructure preserving synthesis of biomedical images. ISBI 2008: 404-407

Kishore Mosaliganti, Raghu Machiraju, Kun Huang: Geometry-driven visualization of microscopic structures in biology. ISBI 2008: 828-831

M. Okan Irfanoglu, Raghu Machiraju, Steffen Sammet, Carlo Pierpaoli, Michael V. Knopp: Automatic Deformable Diffusion Tensor Registration for Fiber Population Analysis. MICCAI (2) 2008: 1014-1022

Mario Botsch, Baoquan Chen, Raghu Machiraju, Torsten Möller: Special section on the joint Symposium on Point-based Graphics and Volume Graphics 2006. Computers & Graphics 31(2): 155-156 (2007)

Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz: Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Computing in Science and Engineering 9(1): 38-47 (2007)

Kishore Mosaliganti, Firdaus Janoos, Richard Sharp, Randall Ridgway, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone, Joel H. Saltz: Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. IEEE Trans. Med. Imaging 26(9): 1283-1290 (2007)

Richard Sharp, Jacob Adams, Raghu Machiraju, Robert Lee, Robert Crane: Physics-Based Subsurface Visualization of Human Tissue. IEEE Trans. Vis. Comput. Graph. 13(3): 620-629 (2007)

Alan T. Murray, Kamyoung Kim, James W. Davis, Raghu Machiraju, Richard E. Parent: Coverage optimization to support security monitoring. Computers, Environment and Urban Systems 31(2): 133-147 (2007)

Firdaus Janoos, Shantanu Singh, M. Okan Irfanoglu, Raghu Machiraju, Richard E. Parent: Activity Analysis Using Spatio-Temporal Trajectory Volumes in Surveillance Applications. IEEE VAST 2007: 3-10

Firdaus Janoos, M. Okan Irfanoglu, Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone: Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions. ISBI 2007: 300-303

Monika Jankun-Kelly, Ming Jiang, David Thompson, Raghu Machiraju: Vortex Visualization for Practical Engineering Applications. IEEE Trans. Vis. Comput. Graph. 12(5): 957-964 (2006)

Richard Sharp, Raghu Machiraju: Accelerating subsurface scattering using Cholesky factorization. The Visual Computer 22(8): 541-549 (2006)

Sameep Mehta, Srinivasan Parthasarathy, Raghu Machiraju: On Trajectory Representation for Scientific Features. ICDM 2006: 997-1001

Bryan Mehta, Srinivasan Parthasarathy, Raghu Machiraju: Visual Exploration of Spatio-temporal Relationships for Scientific Data. IEEE VAST 2006: 11-18

Kishore Mosaliganti, Guang Jia, Johannes Heverhagen, Raghu Machiraju, Joel H. Saltz, Michael V. Knopp: Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images. MICCAI (1) 2006: 832-839

Yootai Kim, Raghu Machiraju, David Thompson: Path-based control of smoke simulations. Symposium on Computer Animation 2006: 33-42

Jinho Lee, Lance C. Burton, Raghu Machiraju, Donna S. Reese: Efficient rendering of multiblock curvilinear grids with complex boundaries. Journal of Visualization and Computer Animation 16(1): 53-68 (2005)

Gheorghe Craciun, Ming Jiang, David Thompson, Raghu Machiraju: Spatial Domain Wavelet Design for Feature Preservation in Computational Data Sets. IEEE Trans. Vis. Comput. Graph. 11(2): 149-159 (2005)

Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju: A Bilinear Illumination Model for Robust Face Recognition. ICCV 2005: 1177-1184

Leonid Glimcher, Gagan Agrawal, Sameep Mehta, Ruoming Jin, Raghu Machiraju: Parallelizing a Defect Detection and Categorization Application. IPDPS 2005

Jinho Lee, Hanspeter Pfister, Baback Moghaddam, Raghu Machiraju: Estimation of 3D Faces and Illumination from Single Photographs Using A Bilinear Illumination Model. Rendering Techniques 2005: 73-82

Sameep Mehta, Steve Barr, Tat-Sang Choy, Hui Yang, Srinivasan Parthasarathy, Raghu Machiraju, John Wilkins: Dynamic Classification of Defect Structures in Molecular Dynamics Simulation Data. SDM 2005

Richard Sharp, Raghu Machiraju: A Simplified Model for Inhomogeneous Subsurface Scattering. Volume Graphics 2005: 63-71

Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju: Finding Optimal Views for 3D Face Shape Modeling. FGR 2004: 31-36

David Thompson, Srinivasan Parthasarathy, Raghu Machiraju, Scott Lawrence: Improvements to Response-Surface Based Vehicle Design Using a Feature-Centric Approach. International Conference on Computational Science 2004: 764-770

Yootai Kim, Raghu Machiraju, David Thompson: Rough Interface Reconstruction Using the Level Set Method. IEEE Visualization 2004: 251-258

Sameep Mehta, Kaden Hazzard, Raghu Machiraju, Srinivasan Parthasarathy, John Wilkins: Detection and Visualization of Anomalous Structures in Molecular Dynamics Simulation Data. IEEE Visualization 2004: 465-472

Baback Moghaddam, Jinho Lee, Hanspeter Pfister, Raghu Machiraju: Model-Based 3D Face Capture with Shape-from-Silhouettes. AMFG 2003: 20-27

Bala Krishna Nakshatrala, David Thompson, Raghu Machiraju: Ranked representation of vector fields. Data Visualization: The State of the Art 2003: 301-316

Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju: Silhouette-Based 3D Face Shape Recovery. Graphics Interface 2003: 21-30

Ming Jiang, Tat-Sang Choy, Sameep Mehta, Matt Coatney, Steve Barr, Kaden Hazzard, David Richie, Srinivasan Parthasarathy, Raghu Machiraju, David Thompson, John Wilkins, Boyd Gatlin: Feature Mining Paradigms for Scientific Data. SDM 2003

Yootai Kim, Raghu Machiraju, David Thompson: Rough Surface Modeling Using Surface Growth. Shape Modeling International 2003: 33-44, 285

Raghu Machiraju, Chris Johnson, Terry S. Yoo, Roger Crawfis, David S. Ebert, Don Stredney: Do I Really See a Bone? IEEE Visualization 2003: 623-634

Anton H. J. Koning, Raghu Machiraju, Cláudio T. Silva (Eds.): Proceedings of the IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2003, October 20-21, 2003, Seattle, WA, USA. IEEE 2003, isbn 0-7803-8122-X

Ming Jiang, Raghu Machiraju, David Thompson: Geometric Verification of Features in Flow Fields. IEEE Visualization 2002: 307-314

Naveen Kumar Polapally, Raghu Machiraju, Dhabaleswar K. Panda: Feature estimation for efficient streaming. VolVis 2002: 107-114

Alireza Entezari, Randy K. Scoggins, Torsten Möller, Raghu Machiraju: Shading for Fourier Volume Rendering. VolVis 2002: 131-138

Hanspeter Pfister, William E. Lorensen, Chandrajit L. Bajaj, Gordon L. Kindlmann, William J. Schroeder, Lisa Sobierajski Avila, Ken Martin, Raghu Machiraju, Jinho Lee: The Transfer Function Bake-Off. IEEE Computer Graphics and Applications 21(3): 16-22 (2001)

Randy K. Scoggins, Raghu Machiraju, Robert J. Moorhead: Approximate Shading for the Re-Illumination of Synthetic Images. IEEE Visualization 2001

Shivaraj Tenginakai, Jinho Lee, Raghu Machiraju: Salient Iso-Surface Detection with Model-Independent Statistical Signatures. IEEE Visualization 2001

Randy K. Scoggins, Robert J. Moorhead, Raghu Machiraju: Enabling level-of-detail matching for exterior scene synthesis. IEEE Visualization 2000: 171-178

Nivedita Sahasrabudhe, John E. West, Raghu Machiraju, Mark Janus: Structured Spatial Domain Image and Data Comparison Metrics. IEEE Visualization 1999: 97-104

Raghu Machiraju, Zhifan Zhu, Bryan Fry, Robert J. Moorhead: Structure-Significant Representation of Structured Datasets. IEEE Trans. Vis. Comput. Graph. 4(2): 117-132 (1998)

Torsten Möller, Klaus Mueller, Yair Kurzion, Raghu Machiraju, Roni Yagel: Design of Accurate and Smooth Filters for Function and Derivative Reconstruction. VVS 1998: 143-151

A. Gaddipatti, Raghu Machiraju, Roni Yagel: Steering Image Generation with Wavelet Based Perceptual Metric. Comput. Graph. Forum 16(3): 241-252 (1997)

Torsten Möller, Raghu Machiraju, Klaus Mueller, Roni Yagel: Evaluation and Design of Filters Using a Taylor Series Expansion. IEEE Trans. Vis. Comput. Graph. 3(2): 184-199 (1997)

Torsten Möller, Raghu Machiraju, Klaus Mueller, Roni Yagel: A comparison of normal estimation schemes. IEEE Visualization 1997: 19-26

Zhifan Zhu, Raghu Machiraju, Bryan Fry, Robert J. Moorhead: Wavelet-based multiresolutional representation of computational field simulation datasets. IEEE Visualization 1997: 151-158

Raghu Machiraju, Roni Yagel: Reconstruction Error Characterization and Control: A Sampling Theory Approach. IEEE Trans. Vis. Comput. Graph. 2(4): 364-378 (1996)

Torsten Möller, Raghu Machiraju, Klaus Mueller, Roni Yagel: Classification and Local Error Estimation of Interpolation and Derivative Filters for Volume Rendering. VVS 1996: 71-

Roni Yagel, Raghu Machiraju: Data-parallel, volume-rendering algorithms. The Visual Computer 11(6): 319-338 (1995)

Raghu Machiraju, J. Edward Swan II, Roni Yagel: Spatial Domain Characterization and Control of Reconstruction Errors. Rendering Techniques 1995: 64-73

Raghu Machiraju, Roni Yagel: Efficient feed-forward volume rendering techniques for vector and parallel processors. SC 1993: 699-708