Edward M. Marcotte

Yungki Park, Edward M. Marcotte: Revisiting the negative example sampling problem for predicting protein-protein interactions. Bioinformatics 27(21): 3024-3028 (2011)

Smriti R. Ramakrishnan, Christine Vogel, John T. Prince, Rong Wang, Zhihua Li, Luiz O. Penalva, Margaret Myers, Edward M. Marcotte, Daniel P. Miranker: Integrating shotgun proteomics and mRNA expression data to improve protein identification. Bioinformatics 25(11): 1397-1403 (2009)

Smriti R. Ramakrishnan, Christine Vogel, Taejoon Kwon, Luiz O. Penalva, Edward M. Marcotte, Daniel P. Miranker: Mining gene functional networks to improve mass-spectrometry-based protein identification. Bioinformatics 25(22): 2955-2961 (2009)

John T. Prince, Edward M. Marcotte: mspire: mass spectrometry proteomics in Ruby. Bioinformatics 24(23): 2796-2797 (2008)

John C. Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M. Marcotte, Alan R. Rodrigues, Rong Wang, Shih-Ting Huang, Erik S. Ferlanti, Alexander I. Saeed, Robert D. Fleischmann, Scott N. Peterson, Rembert Pieper: The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinformatics 9 (2008)

Wan Kyu Kim, Edward M. Marcotte: Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence. PLoS Computational Biology 4(11) (2008)

G. Traver Hart, Insuk Lee, Edward M. Marcotte: A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. BMC Bioinformatics 8 (2007)

Smriti R. Ramakrishnan, Rui Mao, Aleksey A. Nakorchevskiy, John T. Prince, Willard S. Willard, Weijia Xu, Edward M. Marcotte, Daniel P. Miranker: A fast coarse filtering method for peptide identification by mass spectrometry. Bioinformatics 22(12): 1524-1531 (2006)

Razvan C. Bunescu, Ruifang Ge, Rohit J. Kate, Edward M. Marcotte, Raymond J. Mooney, Arun K. Ramani, Yuk Wah Wong: Comparative experiments on learning information extractors for proteins and their interactions. Artificial Intelligence in Medicine 33(2): 139-155 (2005)

Shailesh V. Date, Edward M. Marcotte: Protein function prediction using the Protein Link EXplorer (PLEX). Bioinformatics 21(10): 2558-2559 (2005)

Inderjit S. Dhillon, Edward M. Marcotte, Usman Roshan: Diametrical clustering for identifying anti-correlated gene clusters. Bioinformatics 19(13): 1612-1619 (2003)

Edward M. Marcotte: Predicting Protein Function and Nworks on a Genomewide Scale. Gene Regulations and Metabolism 2002: 223-249

Edward M. Marcotte, Shailesh V. Date: Exploiting Big Biology: Integrating Large-scale Biological Data for Function Inference. Briefings in Bioinformatics 2(4): 363-374 (2001)

Edward M. Marcotte, Ioannis Xenarios, David Eisenberg: Mining literature for protein-protein interactions. Bioinformatics 17(4): 359-363 (2001)

Ioannis Xenarios, Esteban Fernandez, Lukasz Salwínski, Xiaoqun Joyce Duan, Michael J. Thompson, Edward M. Marcotte, David Eisenberg: DIP: The Database of Interacting Proteins: 2001 update. Nucleic Acids Research 29(1): 239-241 (2001)

Ioannis Xenarios, Danny W. Rice, Lukasz Salwínski, Marisa K. Baron, Edward M. Marcotte, David Eisenberg: DIP: the Database of Interacting Proteins. Nucleic Acids Research 28(1): 289-291 (2000)