Victor M. Markowitz

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Research 40(Database-Issue): 115-122 (2012)

Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Research 40(Database-Issue): 123-129 (2012)

Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides: The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 40(Database-Issue): 571-579 (2012)

Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides: The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Research 38(Database-Issue): 346-354 (2010)

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Research 38(Database-Issue): 382-390 (2010)

Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides: IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25(17): 2271-2278 (2009)

Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter: A Statistical Framework for the Functional Analysis of Metagenomes. RECOMB 2009: 496-511

Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Research 36(Database-Issue): 528-533 (2008)

Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research 36(Database-Issue): 534-538 (2008)

Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz: Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13

Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz: Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics 8 (2007)

Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: The integrated microbial genomes (IMG) system. Nucleic Acids Research 34(Database-Issue): 344-348 (2006)

Victor M. Markowitz: An Application Driven Perspective on Biological Data Integration. DILS 2006: 1

Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides: An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367

Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides: The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB 2005: 1067-1078

Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers: Biological Data Management: Research, Practice and Opportunities. VLDB 2004: 1233-1236

Victor M. Markowitz: Data Management Challenges for Molecular and Cell Biology: An Industry Perspective. OMICS 7(1): 121-122 (2003)

Victor M. Markowitz, I-Min A. Chen, Anthony Kosky: Gene Expression Data Management: A Case Study. EDBT 2002: 722-731

Victor M. Markowitz, Thodoros Topaloglou: Applying Data Warehousing Concepts to Gene Expression Data Management. BIBE 2001: 65-72

Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz: Seamless Integration of Biological Applications within a Database Framework. ISMB 1999: 272-281

Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto: Exploring Heterogeneous Biological Databases: Tools and Applications. EDBT 1998: 499-513

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou: Advanced Query Mechanisms for Biological Databases. ISMB 1998: 43-51

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto: Developing and Accessing Scientific Databases with the OPM Data Management Tools. ICDE 1997: 580

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto: Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools. SSDBM 1997: 114-115

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto: Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. SSDBM 1997: 237-248

I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman: Version Management for Scientific Databases. EDBT 1996: 289-303

I-Min A. Chen, Victor M. Markowitz: An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Inf. Syst. 20(5): 393-418 (1995)

Victor M. Markowitz: Heterogeneous Molecular Biology Databases. Journal of Computational Biology 2(4): 537-538 (1995)

Victor M. Markowitz, Otto Ritter: Characterizing Heterogeneous Molecular Biology Database Systems. Journal of Computational Biology 2(4): 547-556 (1995)

I-Min A. Chen, Victor M. Markowitz: Modeling Scientific Experiments with an Object Data Model. ICDE 1995: 391-400

Victor M. Markowitz: Safe referential integrity and null constraint structures in relational databases. Inf. Syst. 19(4): 359-378 (1994)

Victor M. Markowitz, Arie Shoshani: An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools. ER 1994: 333-350

Victor M. Markowitz, I-Min A. Chen: Data Management Tools for Genomic Applications: A Progress Report. DEXA 1993: 529-540

Victor M. Markowitz, Arie Shoshani: Object Queries over Relational Databases: Language, Implementation, and Applications. ICDE 1993: 71-80

Victor M. Markowitz, Arie Shoshani: Representing Extended Entity-Relationship Structures in Relational Databases: A Modular Approach. ACM Trans. Database Syst. 17(3): 423-464 (1992)

Victor M. Markowitz: A Relation Merging Technique for Relational Databases. ICDE 1992: 428-437

Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn: Data Management for Genomic Mapping Applications: A Case Study. SSDBM 1992: 45-57

Victor M. Markowitz: Problems Underlying the Use of Referential Integrity in Relational Database Management Systems. ICDE 1991

Victor M. Markowitz: An Architecture for Identifying Objects in Multidatabases. RIDE-IMS 1991: 294-301

Victor M. Markowitz: Safe Referential Structures in Relational Databases. VLDB 1991: 123-132

Victor M. Markowitz, Johann A. Makowsky: Identifying Extended Entity-Relationship Object Structures in Relational Schemas. IEEE Trans. Software Eng. 16(8): 777-790 (1990)

Victor M. Markowitz: Representing Processes in the Extended Entity-Relationship Model. ICDE 1990: 103-110

Victor M. Markowitz: Referential Integrity Revisited: An Object-Oriented Perspective. VLDB 1990: 578-589

Victor M. Markowitz, Arie Shoshani: Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas. ER 1989: 75-93

Victor M. Markowitz, Arie Shoshani: Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases. ER 1989: 325-343

Victor M. Markowitz, Arie Shoshani: On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model. SIGMOD Conference 1989: 430-439

Victor M. Markowitz, Johann A. Makowsky: Incremental Restructuring of Relational Schemas. ICDE 1988: 276-284

Victor M. Markowitz, Johann A. Makowsky: Incremental Reorganization of Relational Databases. VLDB 1987: 127-135

Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics: Entity-Relationship Consistency for Relational Schemas. ICDT 1986: 306-322

Victor M. Markowitz, Yoav Raz: An entity-relationship algebra and its semantic description capabilities. Journal of Systems and Software 4(2-3): 147-162 (1984)

Victor M. Markowitz, Yoav Raz: A Modified Relational Algebra and its Use in an Entity-Relationship Environment. ER 1983: 315-328

Victor M. Markowitz, Yoav Raz: ERROL: An Entity-Relationship, Role Oriented, Query Language. ER 1983: 329-345