Marco A. Marra

Martin Krzywinski, Inanç Birol, Steven J. M. Jones, Marco A. Marra: Hive plots - rational approach to visualizing networks. Briefings in Bioinformatics 13(5): 627-644 (2012)

Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah: Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinformatics 28(2): 167-175 (2012)

Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah: JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinformatics 28(7): 907-913 (2012)

Ken Chen, John W. Wallis, Cyriac Kandoth, Joelle M. Kalicki-Veizer, Karen L. Mungall, Andrew J. Mungall, Steven J. M. Jones, Marco A. Marra, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, John N. Weinstein, Li Ding: BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. Bioinformatics 28(14): 1923-1924 (2012)

Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah: deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. PLoS Computational Biology 7(5) (2011)

Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah: SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinformatics 26(6): 730-736 (2010)

Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra: Genomic analysis of a rare human tumor. BMC Bioinformatics 11(S-4): O3 (2010)

R. T. F. Wong, Stephane Flibotte, Richard Corbett, P. Saeedi, Steven J. M. Jones, Marco A. Marra, Jacqueline E. Schein, Inanç Birol: LaneRuler: Automated Lane Tracking for DNA Electrophoresis Gel Images. IEEE T. Automation Science and Engineering 7(3): 706-708 (2010)

Inanç Birol, Shaun D. Jackman, Cydney B. Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Douglas E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones: De novo transcriptome assembly with ABySS. Bioinformatics 25(21): 2872-2877 (2009)

Ágnes Baross, Allen D. Delaney, H. Irene Li, Tarun Nayar, Stephane Flibotte, Hong Qian, Susanna Y. Chan, Jennifer Asano, Adrian Ally, Manqiu Cao, Patricia Birch, Mabel Brown-John, Nicole Fernandes, Anne Go, Giulia C. Kennedy, Sylvie Langlois, Patrice Eydoux, J. M. Friedman, Marco A. Marra: Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data. BMC Bioinformatics 8 (2007)

Stephane Flibotte, Readman Chiu, Chris Fjell, Martin Krzywinski, Jacqueline E. Schein, Heesun Shin, Marco A. Marra: Automated ordering of fingerprinted clones. Bioinformatics 20(8): 1264-1271 (2004)

S. R. Ness, W. Terpstra, Martin Krzywinski, Marco A. Marra, Steven J. M. Jones: Assembly of fingerprint contigs: parallelized FPC. Bioinformatics 18(3): 484-485 (2002)