Maryann E. Martone

David N. Orloff, Janet H. Iwasa, Maryann E. Martone, Mark H. Ellisman, Caroline M. Kane: The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Research 41(Database-Issue): 1241-1250 (2013)

Richard J. Giuly, Maryann E. Martone, Mark H. Ellisman: Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics 13: 29 (2012)

Vadim Astakhov, Anita Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman: Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. Procedia CS 9: 1595-1603 (2012)

Fahim T. Imam, Stephen D. Larson, Anita Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone: Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. FOIS 2012: 15-28

Anita de Waard, Sophia Ananiadou, Maryann E. Martone, Ágnes Sándor, Hagit Shatkay: Detecting and using document structure in scientific text. IHI 2012: 883-884

Olivier Bodenreider, Maryann E. Martone, Alan Ruttenberg (Eds.): Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011. CEUR Workshop Proceedings 833, CEUR-WS.org 2012

Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons Verbeek, Ilya Zaslavsky, Jyl Boline: Digital Atlasing and Standardization in the Mouse Brain. PLoS Computational Biology 7(2) (2011)

Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita Bandrowski, Maryann E. Martone: NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. ICBO 2011

Chris Mungall, David Anderson, Anita Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa Haendel: An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO 2011

Jay (Subbarao) Kola, Jonathan Harris, Stephen Lawrie, Alan L. Rector, Carole A. Goble, Maryann E. Martone: Towards an ontology for psychosis. Cognitive Systems Research 11(1): 42-52 (2010)

Han Suk Kim, Jürgen P. Schulze, Angela C. Cone, Gina E. Sosinsky, Maryann E. Martone: Dimensionality reduction on multi-dimensional transfer functions for multi-channel volume data sets. Information Visualization 9(3): 167-180 (2010)

Han Suk Kim, Jürgen P. Schulze, Angela C. Cone, Gina E. Sosinsky, Maryann E. Martone: Multichannel transfer function with dimensionality reduction. VDA 2010: 75300

Lynn Young, Samson W. Tu, Lakshika Tennakoon, David Vismer, Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Maryann E. Martone, Amar K. Das, Matthew J. McAuliffe: Ontology driven data integration for autism research. CBMS 2009: 1-7

Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone: NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology. SWAT4LS 2009

Daniel Gardner, Huda Akil, Giorgio A. Ascoli, Douglas M. Bowden, William J. Bug, Duncan E. Donohue, David H. Goldberg, Bernice Grafstein, Jeffrey S. Grethe, Amarnath Gupta, Maryam Halavi, David N. Kennedy, Luis N. Marenco, Maryann E. Martone, Perry L. Miller, Hans-Michael Müller, Adrian Robert, Gordon M. Shepherd, Paul W. Sternberg, David C. Van Essen, Robert W. Williams: The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. Neuroinformatics 6(3): 149-160 (2008)

William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone: The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6(3): 175-194 (2008)

Amarnath Gupta, William J. Bug, Luis N. Marenco, Xufei Qian, Christopher Condit, Arun Rangarajan, Hans-Michael Müller, Perry L. Miller, Brian Sanders, Jeffrey S. Grethe, Vadim Astakhov, Gordon M. Shepherd, Paul W. Sternberg, Maryann E. Martone: Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). Neuroinformatics 6(3): 205-217 (2008)

Luis N. Marenco, Giorgio A. Ascoli, Maryann E. Martone, Gordon M. Shepherd, Perry L. Miller: The NIF LinkOut Broker: A Web Resource to Facilitate Federated Data Integration using NCBI Identifiers. Neuroinformatics 6(3): 219-227 (2008)

Luis N. Marenco, Yuli Li, Maryann E. Martone, Paul W. Sternberg, Gordon M. Shepherd, Perry L. Miller: Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 6(3): 229-239 (2008)

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz: Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Transactions on Information Technology in Biomedicine 12(2): 154-161 (2008)

Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone: Toward an Ontological Database for Subcellular Neuroanatomy. ER Workshops 2007: 64-73

J. P. Lewis, Iman Mostafavi, Gina E. Sosinsky, Maryann E. Martone, Ruth West: Shape Priors by Kernel Density Modeling of PCA Residual Structure. ICIP (4) 2007: 333-336

Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone: An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. OWLED 2007

Stephen D. Larson, Maryann E. Martone: Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology. OWLED 2007

Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth West, Hiromu Otsuka, Sei Naito, Steven Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh, Mark H. Ellisman: Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter. Future Generation Comp. Syst. 22(8): 1032-1039 (2006)

Diana L. Price, Sunny K. Chow, Natalie A. B. MacLean, Hiroyuki Hakozaki, Steven Peltier, Maryann E. Martone, Mark H. Ellisman: High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics 4(1): 65-80 (2006)

Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman: Semantically Based Data Integration Environment for Biomedical Research. CBMS 2006: 171-176

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Sunny K. Chow, Stephan Lamont, Maryann E. Martone: Imaging and visual analysis - Large image correction and warping in a cluster environment. SC 2006: 79

Li Chen, Maryann E. Martone, Amarnath Gupta, Lisa Fong, Mona Wong-Barnum: OntoQuest: Exploring Ontological Data Made Easy. VLDB 2006: 1183-1186

Ilya Zaslavsky, Haiyun He, Joshua Tran, Maryann E. Martone, Amarnath Gupta: Integrating Brain Data Spatially: Spatial Data Infrastructure and Atlas Environment for Online Federation and Analysis of Brain Images. DEXA Workshops 2004: 389-393

Steven Peltier, Abel W. Lin, David Lee, Stephen Mock, Stephan Lamont, Tomas E. Molina, Mona Wong, Lu Dai, Maryann E. Martone, Mark H. Ellisman: The Telescience Portal for advanced tomography applications. J. Parallel Distrib. Comput. 63(5): 539-550 (2003)

Maryann E. Martone, Shenglan Zhang, Amarnath Gupta, Xufei Qian, Haiyun He, Diana L. Price, Mona Wong, Simone Santini, Mark H. Ellisman: The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1(4): 379-395 (2003)

Amarnath Gupta, Bertram Ludäscher, Jeffrey S. Grethe, Maryann E. Martone: Towards a formalization of disease-specific ontologies for neuroinformatics. Neural Networks 16(9): 1277-1292 (2003)

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: BIRN-M: A Semantic Mediator for Solving Real-World Neuroscience Problems. SIGMOD Conference 2003: 678

Shenglan Zhang, Xufei Qian, Amarnath Gupta, Maryann E. Martone: A Practical Approach for Microscopy Imaging Data Management (MIDM) in Neuroscience. SSDBM 2003: 237-240

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone, Xufei Qian, Edward Ross, Joshua Tran, Ilya Zaslavsky: A System for Managing Alternate Models in Model-Based Mediation. BNCOD 2002: 54-57

Xufei Qian, Bertram Ludäscher, Maryann E. Martone, Amarnath Gupta: Navigating Virtual Information Sources with Know-ME. EDBT 2002: 739-741

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: Registering Scientific Information Sources for Semantic Mediation. ER 2002: 182-198

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: An Extensible Model-Based Mediatior System with Domain Maps. ICDE Demo Sessions 2001

Bertram Ludäscher, Amarnath Gupta, Maryann E. Martone: Model-Based Mediation with Domain Maps. ICDE 2001: 81-90

Amarnath Gupta, Bertram Ludäscher, Maryann E. Martone: Knowledge-Based Integration of Neuroscience Data Sources. SSDBM 2000: 39-52

Bertram Ludäscher, Amarnath Gupta, Maryann E. Martone: Model-Based Information Integration in a Neuroscience Mediator System. VLDB 2000: 639-642