Hideo Matsuda

Takeru Nakazato, Hidemasa Bono, Hideo Matsuda, Toshihisa Takagi: Gendoo: Functional profiling of gene and disease features using MeSH vocabulary. Nucleic Acids Research 37(Web-Server-Issue): 166-169 (2009)

Sami Maekawa, Atsuko Matsumoto, Yoichi Takenaka, Hideo Matsuda: Tissue-specific functions based on information content of gene ontology using cap analysis gene expression. Med. Biol. Engineering and Computing 45(11): 1029-1036 (2007)

Hideo Matsuda: A Grid Environment for Data Integration of Scientific Databases. e-Science 2005: 3-4

Gen Kawamura, Masato Kitajima, Kentaro Wakatsuki, Takehiro Furudate, Takahiro Kosaka, Kazuto Yamazaki, Reiji Teramoto, Susumu Date, Shinji Shimojo, Hideo Matsuda: A Grid-based Information Integration System for Drug Discovery. ICDE Workshops 2005: 1167

Takahiro Kosaka, Susumu Date, Hideo Matsuda, Shinji Shimojo: Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery. SAINT Workshops 2005: 324-327

Hideya Kawaji, Yoichi Takenaka, Hideo Matsuda: Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinformatics 20(2): 243-252 (2004)

Takeshi Nagashima, Hideo Matsuda, Diego G. Silva, Nikolai Petrovsky, Akihiko Konagaya, Christian Schönbach: FREP: a database of functional repeats in mouse cDNAs. Nucleic Acids Research 32(Database-Issue): 471-475 (2004)

Haruki Nakamura, Susumu Date, Hideo Matsuda, Shinji Shimojo: A Challenge towards Next-Generation Research Infrastructure for Advanced Life Science. New Generation Comput. 22(2): 157-166 (2004)

Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda: Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. CSB 2004: 632-633

Shoko Miyake, Yoichi Takenaka, Hideo Matsuda: A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. CSB 2004: 634-635

Yukako Tohsato, Takahiro Kosaka, Susumu Date, Shinji Shimojo, Hideo Matsuda: Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process. LSGRID 2004: 43-52

Takeya Kasukawa, Hidemasa Bono, Yoshihide Hayashizaki, Yasushi Okazaki, Hideo Matsuda: MaXML: mouse annotation XML. In Silico Biology 4 (2003)

Shoko Miyake, Yukako Tohsato, Yoichi Takenaka, Hideo Matsuda: Clustering Method for Comparative Analysis between Genomes and Pathways. DASFAA 2003: 327-334

Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda: Using Data Compression for Multidimensional Distribution Analysis. IEEE Intelligent Systems 17(3): 48-54 (2002)

Shoko Miyake, Yukako Tohsato, Hideo Matsuda: An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways. CSB 2002: 329-329

Shigeto Seno, Reiji Teramoto, Hideo Matsuda: P-quasi Complete Linkage Analysis for Gene-Expression Data. CSB 2002: 342

Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama: PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Research 29(1): 219-220 (2001)

Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama: Quick selection of representative protein chain sets based on customizable requirements. Bioinformatics 16(6): 520-526 (2000)

Takeya Kasukawa, Michio Nakanishi, Hideo Matsuda, Akihiro Hashimoto: An efficient procedure for maintaining materialized views on distributed database systems. Systems and Computers in Japan 31(5): 86-96 (2000)

Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto: A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy. ISMB 2000: 376-383

Makoto Ando, Yutaka Akiyama, Hideo Matsuda: Hierarchical Approach to Parallel Tree Search for Protein Conformational Analysis. PDPTA 2000

Hideo Matsuda, T. Ishihara, Akihiro Hashimoto: Classifying Molecular Sequences Using a Linkage Graph With Their Pairwise Similarities. Theor. Comput. Sci. 210(2): 305-325 (1999)

Hironori Nakajo, Takashi Matsumoto, Masaki Kohata, Hideo Matsuda, Kei Hiraki, Yukio Kaneda: High Performance I/O System of the Distributed Shared-Memory Massively Parallel Computer JUMP-1. Parallel and Distributed Computing and Systems 1995: 470-473

Gary J. Olsen, Hideo Matsuda, Ray Hagstrom, Ross A. Overbeek: fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Computer Applications in the Biosciences 10(1): 41-48 (1994)

Hideo Matsuda, Yukio Kaneda: An Application of an OR-Parallel Prolog Systemto Phylogenetic Analysis. Lisp and Symbolic Computation 7(2-3): 211-229 (1994)

Hideo Matsuda, Gary J. Olsen, Ross A. Overbeek, Yukio Kaneda: Fast phylogenetic analysis on a massively parallel machine. International Conference on Supercomputing 1994: 297-302

Yukio Kaneda, Hideo Matsuda, Shigeo Suzuka: A Priority Control System for OR-Parallel Prolog and Its Performance Evaluation. Parallel Symbolic Computing 1992: 42-53

Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa: Implementing Parallel Prolog System on Multiprocessor System PARK. IWDM 1987: 599-612

Yukio Kaneda, Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Shumin Kuo, Sadao Maekawa: Sequential Prolog Machine PEK. New Generation Comput. 4(1): 51-66 (1986)

Hideo Matsuda, M. Kohata, T. Masuo, Yukio Kaneda, Sadao Maekawa: Parallel Prolog Machine PARK: Its Hardware Structure and Prolog System. LP 1985: 35-43

Naoyuki Tamura, Koichi Wada, Hideo Matsuda, Yukio Kaneda, Sadao Maekawa: Sequential Prolog Machine PEK. FGCS 1984: 542-550