Ignacio Medina

Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí: Concurrent and Accurate RNA Sequencing on Multicore Platforms. CoRR abs/1304.0681 (2013)

Belén Lorente-Galdos, Ignacio Medina, Carlos Morcillo-Suarez, Txema Heredia, Angel Carreño-Torres, Ricardo Sangros, Josep Alegre, Guillermo Pita, Gemma Vellalta, Núria Malats, David G. Pisano, Joaquín Dopazo, Arcadi Navarro: Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs. IJDMB 6(3): 324-334 (2012)

Ignacio Medina, Alejandro de María, Marta Bleda, Francisco Salavert, Roberto Alonso, Cristina Y. González, Joaquín Dopazo: VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing. Nucleic Acids Research 40(Web-Server-Issue): 54-58 (2012)

Marta Bleda, Ignacio Medina, Roberto Alonso, Alejandro de María, Francisco Salavert, Joaquín Dopazo: Inferring the regulatory network behind a gene expression experiment. Nucleic Acids Research 40(Web-Server-Issue): 168-172 (2012)

Marta Bleda, Joaquín Tárraga, Alejandro de María, Francisco Salavert, Luz Garcia-Alonso, Matilde Celma, Ainoha Martin, Joaquín Dopazo, Ignacio Medina: CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. Nucleic Acids Research 40(Web-Server-Issue): 609-614 (2012)

Jose Salavert Torres, Ignacio Blanquer Espert, Andres Tomas Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo: Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE/ACM Trans. Comput. Biology Bioinform. 9(4): 1245-1256 (2012)

Cristina Y. González, Marta Bleda, Francisco Salavert, Rubén Sánchez, Joaquín Dopazo, Ignacio Medina: Multicore and Cloud-Based Solutions for Genomic Variant Analysis. Euro-Par Workshops 2012: 273-284

Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo: Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Research 39(Web-Server-Issue): 470-474 (2011)

Daniel Lichtnow, Ronnie Alves, José Palazzo Moreira de Oliveira, Ana M. Levin, Oscar Pastor, Ignacio Medina Castello, Joaquín Dopazo: Using Papers Citations for Selecting the Best Genomic Databases. SCCC 2011: 33-42

Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García, Martina Marbà, David Montaner, Joaquín Dopazo: Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Research 38(Web-Server-Issue): 210-213 (2010)

María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa: Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Research 38(Web-Server-Issue): 239-245 (2010)

Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo: Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Research 37(Web-Server-Issue): 340-344 (2009)

Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost J. J. van Durme, Joaquín Dopazo, Frederic Rousseau, Joost Schymkowitz: Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Nucleic Acids Research 36(Database-Issue): 825-829 (2008)

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo: GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Research 36(Web-Server-Issue): 308-314 (2008)

Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo: Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Research 36(Web-Server-Issue): 341-346 (2008)

Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo: Prophet, a web-based tool for class prediction using microarray data. Bioinformatics 23(3): 390-391 (2007)

Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo: Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research 35(Web-Server-Issue): 38-42 (2007)

Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo: ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. Nucleic Acids Research 35(Web-Server-Issue): 81-85 (2007)

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo: FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Research 35(Web-Server-Issue): 91-96 (2007)