Pedro Mendes

Luís Filipe Teófilo, Luís Paulo Reis, Henrique Lopes Cardoso, Dinis Félix, Rui Sêca, João Ferreira, Pedro Mendes, Nuno Cruz, Vitor Pereira, Nuno Passos: Computer Poker Research at LIACC. CoRR abs/1301.5946 (2013)

Joseph O. Dada, Pedro Mendes: ManyCell: A Multiscale Simulator for Cellular Systems. CMSB 2012: 366-369

Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton: The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integrative Bioinformatics 8(2) (2011)

Pedro Mendes, Natalie J. Stanford, Kieran Smallbone: Kinetic modelling of large-scale metabolic networks. CMSB 2011: 5-6

Joseph O. Dada, Irena Spasic, Norman W. Paton, Pedro Mendes: SBRML: a markup language for associating systems biology data with models. Bioinformatics 26(7): 932-938 (2010)

Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton: Systematic integration of experimental data and models in systems biology. BMC Bioinformatics 11: 582 (2010)

Neil Swainston, Daniel Jameson, Peter Li, Irena Spasic, Pedro Mendes, Norman W. Paton: Integrative Information Management for Systems Biology. DILS 2010: 164-178

Neil Swainston, Pedro Mendes: libAnnotationSBML: a library for exploiting SBML annotations. Bioinformatics 25(17): 2292-2293 (2009)

Joseph O. Dada, Pedro Mendes: Design and Architecture of Web Services for Simulation of Biochemical Systems. DILS 2009: 182-195

Vasco Vinhas, Pedro Abreu, Pedro Mendes: Business Intelligence based on a Wi-Fi Real Time Positioning Engine - A Practical Application in a Major Retail Company. ICEIS (1) 2009: 11-16

Pedro Abreu, Pedro Mendes: Strategies for Route Planning on Catastrophe Environments - Coordinating Agents on a Fire Fighting Scenario. ICEIS (2) 2009: 277-280

Carlos Amaral, Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, José Pina, Cláudia Pinto: Priberam's Question Answering System in QA@CLEF 2008. CLEF 2008: 337-344

Pedro Abreu, Pedro Mendes: Mastermind: an augment reality approach: [porting a legacy game to new interaction paradigms]. DIMEA 2008: 205-210

Pedro Abreu, Vasco Vinhas, Pedro Mendes: Business Intelligence through Real-Time Tracking - Using a Location System Towards Behaviour Pattern Extraction. ICE-B 2008: 51-57

Dingjun Chen, Chung-Yeol Lee, Cheol Hoon Park, Pedro Mendes: Parallelizing simulated annealing algorithms based on high-performance computer. J. Global Optimization 39(2): 261-289 (2007)

Carlos Amaral, Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto, Daniel Vidal: Priberam's Question Answering System in QA@CLEF 2007. CLEF 2007: 364-371

Pedro Mendes: Metabolomics and the challenges ahead. Briefings in Bioinformatics 7(2): 127 (2006)

Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer: COPASI - a COmplex PAthway SImulator. Bioinformatics 22(24): 3067-3074 (2006)

Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto, Daniel Vidal: Priberam's Question Answering System in a Cross-Language Environment. CLEF 2006: 300-309

Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes: Simulation of biochemical networks using COPASI: a complex pathway simulator. Winter Simulation Conference 2006: 1698-1706

Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson: Challenges for modeling and simulation methods in systems biology. Winter Simulation Conference 2006: 1720-1730

Carlos Amaral, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto: Priberam's Question Answering System for Portuguese. CLEF 2005: 410-419

Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes: Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20(18): 3565-3574 (2004)

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19(4): 524-531 (2003)

Pedro Mendes, Wei Sha, Keying Ye: Artificial gene networks for objective comparison of analysis algorithms. ECCB 2003: 122-129

Pedro Mendes, Pedro Araújo: Using the I. S. as a (Dis)Organization Gauge. ICEIS (2) 2003: 171-176

Pedro Mendes: Emerging bioinformatics for the metabolome. Briefings in Bioinformatics 3(2): 134-145 (2002)

Dianjing Guo, Xingjing Li, Aejaaz Kamal, Olga Brazhnik, Pedro Mendes: A Reference Database for Medicago Truncatula Genes, Protiens, and Metabolites. CSB 2002: 343

Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral: ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinformatics 17(1): 83-94 (2001)

Pedro Mendes, Douglas B. Kell: MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems. Bioinformatics 17(3): 288-289 (2001)

Pedro Mendes, João Menano: Traffic Simulation of Large Regions. ICEIS 1999: 761

Pedro Mendes, Douglas B. Kell: Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 14(10): 869-883 (1998)

Pedro Mendes: GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Computer Applications in the Biosciences 9(5): 563-571 (1993)

Harold Kurstedt, Kwang Lee, Pedro Mendes, Steven Berube: The Responsive System: A New Challenge for AI. IEA/AIE (Vol. 1) 1988: 177-184