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 | 2013 | |
|---|---|---|
| i4 |      | Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler: Generic Strategies for Chemical Space Exploration. CoRR abs/1302.4006 (2013) |
| i3 | | Felix P. Hargreaves, Daniel Merkle: FooPar: A Functional Object Oriented Parallel Framework in Scala. CoRR abs/1304.2550 (2013) |
| 2012 | ||
| c25 | | Rolf Fagerberg, Christoph Flamm, Daniel Merkle, Philipp Peters: Exploring Chemistry Using SMT. CP 2012: 900-915 |
| i2 | | Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler: Inferring Chemical Reaction Patterns Using Rule Composition in Graph Grammars. CoRR abs/1208.3153 (2012) |
| 2011 | ||
| j25 | | Matthias Bernt, Kuan-Yu Chen, Ming-Chiang Chen, An-Chiang Chu, Daniel Merkle, Hung-Lung Wang, Kun-Mao Chao, Martin Middendorf: Finding all sorting tandem duplication random loss operations. J. Discrete Algorithms 9(1): 32-48 (2011) |
| p2 | | Alexander Scheidler, Arne Brutschy, Konrad Diwold, Daniel Merkle, Martin Middendorf: Ant Inspired Methods for Organic Computing. Organic Computing 2011: 95-109 |
| i1 | | Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter F. Stadler: Maximizing Output and Recognizing Autocatalysis in Chemical Reaction Networks is NP-Complete. CoRR abs/1110.6051 (2011) |
| 2010 | ||
| j24 | | Daniel Merkle, Martin Middendorf, Nicolas Wieseke: A parameter-adaptive dynamic programming approach for inferring cophylogenies. BMC Bioinformatics 11(S-1): 60 (2010) |
| 2009 | ||
| j23 | | Konrad Diwold, Daniel Merkle, Martin Middendorf: Adapting to Dynamic Environments: Polyethism in Response Threshold Models for Social Insects. Advances in Complex Systems 12(3): 327-346 (2009) |
| j22 | | Konstantin Klemm, Daniel Merkle, Eckehard Olbrich: Editorial: Artificial Life. Advances in Complex Systems 12(3) (2009) |
| j21 | | Marc Hellmuth, Daniel Merkle, Martin Middendorf: Extended shapes for the combinatorial design of RNA sequences. I. J. Computational Biology and Drug Design 2(4): 371-384 (2009) |
| j20 | | Karl F. Doerner, Daniel Merkle, Thomas Stützle: Special issue on ant colony optimization. Swarm Intelligence 3(1): 1-2 (2009) |
| c24 | | Matthias Bernt, Ming-Chiang Chen, Daniel Merkle, Hung-Lung Wang, Kun-Mao Chao, Martin Middendorf: Finding All Sorting Tandem Duplication Random Loss Operations. CPM 2009: 301-313 |
| c23 | | Marc Hellmuth, Daniel Merkle, Martin Middendorf: On the Design of RNA Sequences for Realizing Extended Shapes. IJCBS 2009: 167-173 |
| 2008 | ||
| e1 | | Christian Blum, Daniel Merkle (Eds.): Swarm Intelligence: Introduction and Applications. Natural Computing Series, Springer 2008, isbn 978-3-540-74088-9 |
| j19 | | Stefan Janson, Daniel Merkle, Martin Middendorf: Molecular docking with multi-objective Particle Swarm Optimization. Appl. Soft Comput. 8(1): 666-675 (2008) |
| j18 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Self-Organized Task Allocation for Service Tasks in Computing Systems with Reconfigurable Components. J. Math. Model. Algorithms 7(2): 237-254 (2008) |
| j17 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: Solving the Preserving Reversal Median Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 332-347 (2008) |
| j16 | | Alexander Scheidler, Daniel Merkle, Martin Middendorf: Stability and performance of ant queue inspired task partitioning methods. Theory in Biosciences 127(2): 149-161 (2008) |
| c22 | | Arne Brutschy, Alexander Scheidler, Daniel Merkle, Martin Middendorf: Learning from House-Hunting Ants: Collective Decision-Making in Organic Computing Systems. ANTS Conference 2008: 96-107 |
| c21 | | Alexander Scheidler, Christian Blum, Daniel Merkle, Martin Middendorf: Emergent Sorting in Networks of Router Agents. ANTS Conference 2008: 299-306 |
| c20 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree. RECOMB-CG 2008: 143-157 |
| p1 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Organic Computing and Swarm Intelligence. Swarm Intelligence 2008: 253-281 |
| 2007 | ||
| j15 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: Using median sets for inferring phylogenetic trees. Bioinformatics 23(2): 129-135 (2007) |
| j14 | | Matthias Bernt, Daniel Merkle, Kai Ramsch, Guido Fritzsch, Marleen Perseke, Detlef Bernhard, Martin Schlegel, Peter F. Stadler, Martin Middendorf: CREx: inferring genomic rearrangements based on common intervals. Bioinformatics 23(21): 2957-2958 (2007) |
| c19 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: A Fast and Exact Algorithm for the Perfect Reversal Median Problem. ISBRA 2007: 305-316 |
| 2006 | ||
| j13 | | Daniel Merkle, Martin Middendorf: Marco Dorigo and Thomas Stützle, Ant Colony Optimization, MIT Press (2004) ISBN 0-262-04219-3. European Journal of Operational Research 168(1): 269-271 (2006) |
| j12 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Modeling Ant Brood ending Patterns with Cellular Automata. J. Cellular Automata 1(2): 183-194 (2006) |
| j11 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: Genome Rearrangement Based on Reversals that Preserve Conserved Intervals. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 275-288 (2006) |
| c18 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders. CompLife 2006: 52-63 |
| c17 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Using Decentralized Clustering for Task Allocation in Networks with Reconfigurable Helper Units. IWSOS/EuroNGI 2006: 137-147 |
| c16 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Self-organized task allocation for computing systems with reconfigurable components. IPDPS 2006 |
| 2005 | ||
| j10 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Decentralized packet clustering in router-based networks. Int. J. Found. Comput. Sci. 16(2): 321-341 (2005) |
| j9 | | Daniel Merkle, Martin Middendorf: On solving permutation scheduling problems with ant colony optimization. Int. J. Systems Science 36(5): 255-266 (2005) |
| j8 | | Daniel Merkle, Christian Blum: Swarm Intelligence - An Optimization-Based Introduction. KI 19(4): 5-10 (2005) |
| j7 | | Daniel Merkle, Martin Middendorf: Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information. Theory in Biosciences 123(4): 277-299 (2005) |
| c15 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Dynamic Decentralized Packet Clustering in Networks. EvoWorkshops 2005: 574-583 |
| c14 | | Stefan Janson, Daniel Merkle: A New Multi-objective Particle Swarm Optimization Algorithm Using Clustering Applied to Automated Docking. Hybrid Metaheuristics 2005: 128-141 |
| c13 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Modelling Ant Brood Tending Behavior with Cellular Automata. International Conference on Computational Science (2) 2005: 412-419 |
| c12 | | Matthias Bernt, Daniel Merkle, Martin Middendorf: A Parallel Algorithm for Solving the Reversal Median Problem. PPAM 2005: 1089-1096 |
| 2004 | ||
| c11 | | Daniel Merkle, Martin Middendorf: Competition Controlled Pheromone Update for Ant Colony Optimization. ANTS Workshop 2004: 95-105 |
| c10 | | Daniel Merkle, Martin Middendorf, Alexander Scheidler: Decentralized Packet Clustering in Networks. IPDPS 2004 |
| 2003 | ||
| j6 | | Daniel Merkle, Martin Middendorf: Ant Colony Optimization with Global Pheromone Evaluation for Scheduling a Single Machine. Appl. Intell. 18(1): 105-111 (2003) |
| j5 | | Stefan Janson, Daniel Merkle, Martin Middendorf, Hossam A. ElGindy, Hartmut Schmeck: On Enforced Convergence of ACO and its Implementation on the Reconfigurable Mesh Architecture Using Size Reduction Tasks. The Journal of Supercomputing 26(3): 221-238 (2003) |
| 2002 | ||
| b1 | | Daniel Merkle: Ameisenalgorithmen: Optimierung und Modellierung. Karlsruhe Institute of Technology 2002, pp. 1-212 |
| j4 | | Daniel Merkle, Martin Middendorf: Modeling the Dynamics of Ant Colony Optimization. Evolutionary Computation 10(3): 235-262 (2002) |
| j3 | | Daniel Merkle, Thomas Worsch: Formal language recognition by stochastic cellular automata. Fundam. Inform. 52(1-3): 183-201 (2002) |
| j2 | | Daniel Merkle, Martin Middendorf: Fast Ant Colony Optimization on Runtime Reconfigurable Processor Arrays. Genetic Programming and Evolvable Machines 3(4): 345-361 (2002) |
| j1 | | Daniel Merkle, Martin Middendorf, Hartmut Schmeck: Ant colony optimization for resource-constrained project scheduling. IEEE Trans. Evolutionary Computation 6(4): 333-346 (2002) |
| c9 | | Daniel Merkle, Martin Middendorf: Modelling ACO: Composed Permutation Problems. Ant Algorithms 2002: 149-162 |
| c8 | | Jürgen Branke, Michael Decker, Daniel Merkle, Hartmut Schmeck: Coevolutionary Ant Algorithms Playing Games. Ant Algorithms 2002: 298-299 |
| c7 | | Daniel Merkle, Martin Middendorf: Ant Colony Optimization with the Relative Pheromone Evaluation Method. EvoWorkshops 2002: 325-333 |
| c6 |  | Daniel Merkle, Martin Middendorf: Studies On The Dynamics Of Ant Colony Optimization Algorithms. GECCO 2002: 105-112 |
| 2001 | ||
| c5 | | Steffen Iredi, Daniel Merkle, Martin Middendorf: Bi-Criterion Optimization with Multi Colony Ant Algorithms. EMO 2001: 359-372 |
| c4 | | Daniel Merkle, Martin Middendorf: A New Approach to Solve Permutation Scheduling Problems with Ant Colony Optimization. EvoWorkshops 2001: 484-494 |
| c3 | | Daniel Merkle, Martin Middendorf: Fast ant colony optimization on reconfigurable processor arrays. IPDPS 2001: 144 |
| 2000 | ||
| c2 | | Daniel Merkle, Martin Middendorf: An Ant Algorithm with a New Pheromone Evaluation Rule for Total Tardiness Problems. EvoWorkshops 2000: 287-296 |
| c1 | | Daniel Merkle, Martin Middendorf, Hartmut Schmeck: Ant Colony Optimization for Resource-Constrained Projet Scheduling. GECCO 2000: 893- |
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