Huaiyu Mi

Huaiyu Mi, Anushya Muruganujan, Paul D. Thomas: PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Research 41(Database-Issue): 377-386 (2013)

Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber: Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinformatics 28(15): 2016-2021 (2012)

Sarah Hunter, Philip Jones, Alex Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Muellenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong: InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research 40(Database-Issue): 306-312 (2012)

Huaiyu Mi, Anushya Muruganujan, Emek Demir, Yukiko Matsuoka, Akira Funahashi, Hiroaki Kitano, Paul D. Thomas: BioPAX support in CellDesigner. Bioinformatics 27(24): 3437-3438 (2011)

Anupama Panikkar, Merrill Knapp, Huaiyu Mi, Dave Anderson, Krishna Kodukula, Amit K. Galande, Carolyn L. Talcott: Applications of Pathway Logic Modeling to Target Identification. Formal Modeling: Actors, Open Systems, Biological Systems 2011: 434-445

Huaiyu Mi, Qing Dong, Anushya Muruganujan, Pascale Gaudet, Suzanna Lewis, Paul D. Thomas: PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Research 38(Database-Issue): 204-210 (2010)

Huaiyu Mi, Nan Guo, Anish Kejariwal, Paul D. Thomas: PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucleic Acids Research 35(Database-Issue): 247-252 (2007)

Paul D. Thomas, Anish Kejariwal, Nan Guo, Huaiyu Mi, Michael J. Campbell, Anushya Muruganujan, Betty Lazareva-Ulitsky: Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Research 34(Web-Server-Issue): 645-650 (2006)

Huaiyu Mi, Betty Lazareva-Ulitsky, Rozina Loo, Anish Kejariwal, Jody A. Vandergriff, Steven Rabkin, Nan Guo, Anushya Muruganujan, Olivier Doremieux, Michael J. Campbell, Hiroaki Kitano, Paul D. Thomas: The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Research 33(Database-Issue): 284-288 (2005)

Paul D. Thomas, Anish Kejariwal, Michael J. Campbell, Huaiyu Mi, Karen Diemer, Nan Guo, Istvan Ladunga, Betty Lazareva-Ulitsky, Anushya Muruganujan, Steven Rabkin, Jody A. Vandergriff, Olivier Doremieux: PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Research 31(1): 334-341 (2003)