Luciano Milanesi

Carlo Maj, Ettore Mosca, Ivan Merelli, Giancarlo Mauri, Luciano Milanesi: Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes. J. Bioinformatics and Computational Biology 11(1) (2013)

Ettore Mosca, Ivan Merelli, Luciano Milanesi, Andrea Clematis, Daniele D'Agostino: A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems. PDP 2013: 427-431

Andrea Manconi, Eloisa Vargiu, Giuliano Armano, Luciano Milanesi: Literature Retrieval and Mining in Bioinformatics: State of the Art and Challenges. Adv. Bioinformatics 2012 (2012)

Ivan Merelli, Federica Viti, Luciano Milanesi: IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis. BMC Bioinformatics 13(S-14): S5 (2012)

Victor Maojo, Martin Fritts, Fernando Martín-Sánchez, Diana de la Iglesia, Raul E. Cachau, Miguel García-Remesal, José Crespo, Joyce A. Mitchell, Alberto Anguita, Nathan Baker, José María Barreiro, Sonia E. Benitez, Guillermo de la Calle, Julio C. Facelli, Peter Ghazal, Antoine Geissbühler, Fernando Gonzalez-Nilo, Norbert M. Graf, Pierre Grangeat, Isabel Hermosilla, Rada Hussein, Josipa Kern, Sabine Koch, Yannick Legré, Victoria López-Alonso, Guillermo López-Campos, Luciano Milanesi, Vassilis Moustakis, Cristian R. Munteanu, Paula Otero, Alejandro Pazos, David Pérez-Rey, George Potamias, Ferran Sanz, Casimir A. Kulikowski: Nanoinformatics: developing new computing applications for nanomedicine. Computing 94(6): 521-539 (2012)

Daniele D'Agostino, Andrea Clematis, Alessandro Guffanti, Luciano Milanesi, Ivan Merelli: A CUDA-based Implementation of the SSAKE Genomics Application. PDP 2012: 612-616

Dario Corrada, Federica Viti, Ivan Merelli, Cristina Battaglia, Luciano Milanesi: myMIR: a genome-wide microRNA targets identification and annotation tool. Briefings in Bioinformatics 12(6): 588-600 (2011)

Roberta Alfieri, Ezio Bartocci, Emanuela Merelli, Luciano Milanesi: Modeling the cell cycle: From deterministic models to hybrid systems. Biosystems 105(1): 34-40 (2011)

Roberto Barbera, Giuseppe Andronico, Giacinto Donvito, Alberto Falzone, J. J. Keijser, Giuseppe La Rocca, Luciano Milanesi, Giorgio Pietro Maggi, Saverio Vicario: A grid portal with robot certificates for bioinformatics phylogenetic analyses. Concurrency and Computation: Practice and Experience 23(3): 246-255 (2011)

Federica Viti, Ivan Merelli, Andrea Calabria, Paolo Cozzi, Ettore Mosca, Roberta Alfieri, Luciano Milanesi: Ontology-based resources for bioinformatics analysis. IJMSO 6(1): 35-45 (2011)

Ivan Merelli, Paolo Cozzi, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi: Image-Based Surface Matching Algorithm Oriented to Structural Biology. IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 1004-1016 (2011)

Ettore Mosca, Luciano Milanesi: Modeling Biochemical Pathways. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 111-126

Erika Salvi, Alessandro Orro, Guia Guffanti, Sara Lupoli, Federica Torri, Cristina Barlassina, Steven G. Potkin, Daniele Cusi, Fabio Macciardi, Luciano Milanesi: Population Stratification Analysis in Genome-Wide Association Studies. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 177-196

Luna Dimitrio, Roberto Natalini, Luciano Milanesi: A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus. BIOINFORMATICS 2011: 39-46

Ivan Merelli, Dario Pescini, Ettore Mosca, Paolo Cazzaniga, Carlo Maj, Giancarlo Mauri, Luciano Milanesi: Grid Computing for Sensitivity Analysis of Stochastic Biological Models. PaCT 2011: 62-73

Daniele D'Agostino, Ivan Merelli, René L. Warren, Alessandro Guffanti, Luciano Milanesi, Andrea Clematis: Parallelization of the SSAKE Genomics Application. PDP 2011: 326-330

Federica Viti, Ivan Merelli, Mieke Timmermans, Michael den Bakker, Francesco Beltrame, Peter Riegman, Luciano Milanesi: Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study. BMC Bioinformatics 11: 566 (2010)

Andrea Calabria, Davide Di Pasquale, Matteo Gnocchi, Paolo Alessandro Cozzi, Alessandro Orro, Gabriele Antonio Trombetti, Luciano Milanesi: Grid Based Genome Wide Studies on Atrial Flutter. J. Grid Comput. 8(4): 511-527 (2010)

Andrea Calabria, Ettore Mosca, Federica Viti, Ivan Merelli, Luciano Milanesi: SNPRanker: a tool for identification and scoring of SNPs associated to target genes. J. Integrative Bioinformatics 7(3) (2010)

Ivan Merelli, Alessandro Guffanti, Marco Fabbri, Andrea Cocito, Laura Furia, Ursula Grazini, Raoul J. P. Bonnal, Luciano Milanesi, Fraser McBlane: RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes. Nucleic Acids Research 38(Web-Server-Issue): 262-267 (2010)

Ettore Mosca, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Luciano Milanesi: Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane Systems. Int. Conf. on Membrane Computing 2010: 285-304

Daniele D'Agostino, Andrea Clematis, Ivan Merelli, Paolo Cozzi, Luciano Milanesi: A Parallel Algorithm for Molecular Surface Matching Through Image Representation. PDP 2010: 387-394

Antonella Galizia, Federica Viti, Andrea Clematis, Luciano Milanesi: A Dynamic Parallel Approach to Recognize Tubular Breast Cancer for TMA Image Building. PDP 2010: 403-410

Paolo Romano, Luciano Milanesi: Complex Search, Ranks, and Biological Discovery: A User's Perspective. SeCO Workshop 2010: 226-235

Luciano Milanesi, Paolo Romano, Gastone C. Castellani, Daniel Remondini, Pietro Liò: Trends in modeling Biomedical Complex Systems. BMC Bioinformatics 10(S-12): 0 (2009)

Ivan Merelli, Andrea Caprera, Alessandra Stella, Marcello Del Corvo, Luciano Milanesi, Barbara Lazzari: The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections. BMC Bioinformatics 10(S-12): 2 (2009)

Federica Chiappori, Pasqualina D'Ursi, Ivan Merelli, Luciano Milanesi, Ermanna Rovida: In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study. BMC Bioinformatics 10(S-12): 3 (2009)

Ettore Mosca, Gloria Bertoli, Eleonora Piscitelli, Laura Vilardo, Rolland A. Reinbold, Ileana Zucchi, Luciano Milanesi: Identification of functionally related genes using data mining and data integration: a breast cancer case study. BMC Bioinformatics 10(S-12): 8 (2009)

Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina: Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinformatics 10(S-12): 16 (2009)

Roberto Barbera, Giacinto Donvito, Alberto Falzone, Giuseppe La Rocca, Luciano Milanesi, Giorgio Pietro Maggi, Saverio Vicario: The GENIUS Grid Portal and robot certificates: a new tool for e-Science. BMC Bioinformatics 10(S-6) (2009)

Paolo Cazzaniga, Giancarlo Mauri, Luciano Milanesi, Ettore Mosca, Dario Pescini: A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems. Workshop on Membrane Computing 2009: 210-226

Federica Viti, Ettore Mosca, Ivan Merelli, Andrea Calabria, Roberta Alfieri, Luciano Milanesi: Ontological Enrichment of the Genes-to-Systems Breast Cancer Database. MTSR 2009: 171-182

Daniele D'Agostino, Andrea Clematis, Ivan Merelli, Paolo Cozzi, Luciano Milanesi: Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening. PDP 2009: 261-267

Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Ivan Merelli, Francesca Barale, Luciano Milanesi, Alessandra Stella, Carlo Pozzi: Version VI of the ESTree db: an improved tool for peach transcriptome analysis. BMC Bioinformatics 9(S-2) (2008)

Alessandro Orro, Guia Guffanti, Erika Salvi, Fabio Macciardi, Luciano Milanesi: SNPLims: a data management system for genome wide association studies. BMC Bioinformatics 9(S-2) (2008)

Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M. Sedivy, Leon N. Cooper, Ettore Verondini, Luciano Milanesi, Gastone C. Castellani: Reconstructing networks of pathways via significance analysis of their intersections. BMC Bioinformatics 9(S-4) (2008)

Federica Viti, Ivan Merelli, Andrea Caprera, Barbara Lazzari, Alessandra Stella, Luciano Milanesi: Ontology-based, Tissue MicroArray oriented, image centered tissue bank. BMC Bioinformatics 9(S-4) (2008)

Ivan Merelli, Alessandro Orro, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi: A parallel protein surface reconstruction system. IJBRA 4(3): 221-239 (2008)

Chanchal K. Mitra, Luciano Milanesi: An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site. J. Integrative Bioinformatics 5(2) (2008)

Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi: The cell cycle DB: a systems biology approach to cell cycle analysis. Nucleic Acids Research 36(Database-Issue): 641-645 (2008)

Ivan Merelli, Paolo Cozzi, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi: Images Based System for Surface Matching in Macromolecular Screening. BIBM 2008: 397-401

Richard C. van der Wath, Elizabeth van der Wath, Antonio Carapelli, Francesco Nardi, Francesco Frati, Luciano Milanesi, Pietro Liò: Bayesian Phylogeny on Grid. BIRD 2008: 404-416

Antonella Galizia, Federica Viti, Alessandro Orro, Daniele D'Agostino, Ivan Merelli, Luciano Milanesi, Andrea Clematis: TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling. CCGRID 2008: 741-746

Paolo Cozzi, Ivan Merelli, Luciano Milanesi: A Visualization ToolKit Based Application for Representing Macromolecular Surfaces. CIBB 2008: 284-292

Antonella Galizia, Daniele D'Agostino, Andrea Clematis, Federica Viti, Alessandro Orro, Ivan Merelli, Luciano Milanesi: Enabling Parallel TMA Image Analysis in a Grid Environment. CISIS 2008: 394-399

Daniele D'Agostino, Andrea Clematis, Ivan Merelli, Luciano Milanesi, Matteo Coloberti: A Grid Service based Parallel Molecular Surface Reconstruction System. PDP 2008: 455-462

Emanuela Merelli, Giuliano Armano, Nicola Cannata, Flavio Corradini, Mark d'Inverno, Andreas Doms, Phillip W. Lord, Andrew Martin, Luciano Milanesi, Steffen Möller, Michael Schroeder, Michael Luck: Agents in bioinformatics, computational and systems biology. Briefings in Bioinformatics 8(1): 45-59 (2007)

Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M. Faioni, Ermanna Rovida: ProCMD: a database and 3D web resource for protein C mutants. BMC Bioinformatics 8(S-1) (2007)

Barbara Lazzari, Andrea Caprera, Cristian Cosentino, Alessandra Stella, Luciano Milanesi, Angelo Viotti: ESTuber db: an online database for Tuber borchii EST sequences. BMC Bioinformatics 8(S-1) (2007)

Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark, Erik M. van Mulligen, Jean-Louis Coatrieux, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioannis G. Tollis, Johan van der Lei: SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics. BMC Bioinformatics 8(S-1) (2007)

Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi: Biowep: a workflow enactment portal for bioinformatics applications. BMC Bioinformatics 8(S-1) (2007)

Gabriele Antonio Trombetti, Raoul J. P. Bonnal, Ermanno Rizzi, Gianluca De Bellis, Luciano Milanesi: Data handling strategies for high throughput pyrosequencers. BMC Bioinformatics 8(S-1) (2007)

Daniel Remondini, Nicola Neretti, Claudio Franceschi, Paolo Tieri, John M. Sedivy, Luciano Milanesi, Gastone C. Castellani: Networks from Gene Expression Time Series: Characterization of Correlation Patterns. I. J. Bifurcation and Chaos 17(7): 2477-2483 (2007)

Fedor Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel: CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Research 35(Database-Issue): 550-556 (2007)

Jean-Yves Bansard, Dietrich Rebholz-Schuhmann, Graham Cameron, Dominic Clark, Erik M. van Mulligen, Francesco Beltrame, Eva del Hoyo-Barbolla, Fernando Martín-Sánchez, Luciano Milanesi, Ioannis G. Tollis, Johan van der Lei, Jean-Louis Coatrieux: Medical Informatics and Bioinformatics: A Bibliometric Study. IEEE Transactions on Information Technology in Biomedicine 11(3): 237-243 (2007)

Antonella Galizia, Federica Viti, Daniele D'Agostino, Ivan Merelli, Luciano Milanesi, Andrea Clematis: Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing. PARCO 2007: 139-146

Daniele D'Agostino, Ivan Merelli, Andrea Clematis, Luciano Milanesi, Alessandro Orro: A Parallel Workflow for the Reconstruction of Molecular Surfaces. PARCO 2007: 147-154

Alessandro Orro, Luciano Milanesi: An Agent System for Automatic Workflows Composition in Grid Environments. ITSSA 1(1): 59-66 (2006)

Paolo Romano, Guglielmo Bertolini, Flavio De Paoli, M. Fattore, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Ivan Porro, Silvia Scaglione, Luciano Milanesi: Network integration of data and analysis of oncology interest. J. Integrative Bioinformatics 3(1) (2006)

Gabriele Antonio Trombetti, Ivan Merelli, Luciano Milanesi: High performance cDNA sequence analysis using grid technology. J. Parallel Distrib. Comput. 66(12): 1482-1488 (2006)

Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann: Grid-Enabled High Throughput Virtual Screening. GCCB 2006: 45-59

Nicolas Jacq, Vincent Breton, Hsin-Yen Chen, Li-Yung Ho, Martin Hofmann, Hurng-Chun Lee, Yannick Legré, Simon C. Lin, Astrid Maaß, Emmanuel Medernach, Ivan Merelli, Luciano Milanesi, Giulio Rastelli, Matthieu Reichstadt, Jean Salzemann, Horst Schwichtenberg, Mahendrakar Sridhar, Vinod Kasam, Ying-Ta Wu, Marc Zimmermann: Large Scale In Silico Screening on Grid Infrastructures. CoRR abs/cs/0611084 (2006)

Giuliano Armano, Gianmaria Mancosu, Luciano Milanesi, Alessandro Orro, Massimiliano Saba, Eloisa Vargiu: A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure. BMC Bioinformatics 6(S-4) (2005)

Pasqualina D'Ursi, Erika Salvi, Paola Fossa, Luciano Milanesi, Ermanna Rovida: Modelling the interaction of steroid receptors with endocrine disrupting chemicals. BMC Bioinformatics 6(S-4) (2005)

Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone: Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinformatics 6(S-4) (2005)

Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Alessandra Stella, Luciano Milanesi, Carlo Pozzi: ESTree db: a Tool for Peach Functional Genomics. BMC Bioinformatics 6(S-4) (2005)

Ivan Merelli, Giulia Morra, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi: High performance workflow implementation for protein surface characterization using grid technology. BMC Bioinformatics 6(S-4) (2005)

Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella: Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinformatics 6(S-4) (2005)

Paolo Romano, Domenico Marra, Luciano Milanesi: Web services and workflow management for biological resources. BMC Bioinformatics 6(S-4) (2005)

Giuliano Armano, Luciano Milanesi, Alessandro Orro: Using Secondary Structure Information to Perform Multiple Alignment. : 78-88 (2005)

Ivan Merelli, Luciano Milanesi, Daniele D'Agostino, Andrea Clematis, Marco Vanneschi, Marco Danelutto: Using Parallel Isosurface Extraction in Superficial Molecular Modeling. DFMA 2005: 288-294

Igor B. Rogozin, B. A. Malyarchuk, Youri I. Pavlov, Luciano Milanesi: From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis. Pacific Symposium on Biocomputing 2005

Igor B. Rogozin, Vladimir N. Babenko, Luciano Milanesi, Youri I. Pavlov: Computational analysis of mutation spectra. Briefings in Bioinformatics 4(3): 210-227 (2003)

Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov: ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Research 30(1): 200-202 (2002)

Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, Luciano Milanesi: Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a `weak' context of the start codon. Bioinformatics 17(10): 890-900 (2001)

Igor B. Rogozin, V. I. Mayorov, M. V. Lavrentieva, Luciano Milanesi, L. R. Adkison: Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs). Briefings in Bioinformatics 1(3): 260-274 (2000)

Luciano Milanesi, D. D'Angelo, Igor B. Rogozin: GeneBuilder: interactive in silico prediction of gene structure. Bioinformatics 15(7): 612-621 (1999)

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton: Integrated databases and computer systems for studying eukaryotic gene expression. Bioinformatics 15(7): 669-686 (1999)

Maria Giuseppina Campi, Paolo Romano, Luciano Milanesi, Domenico Marra, Maria Assunta Manniello, Beatrice Iannotta, Gabriella Rondanina, Elena Grasso, Tiziana Ruzzon, Leonardo Santi: Molecular Probe Data Base (MPDB). Nucleic Acids Research 26(1): 145-147 (1998)

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer: GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB 1998: 95-104

Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov: Gene structure prediction using information on homologous protein sequence. Computer Applications in the Biosciences 12(3): 161-170 (1996)

Luciano Milanesi, M. Muselli, P. Arrigo: Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes. Computer Applications in the Biosciences 12(5): 399-404 (1996)

Y. V. Kondrakhin, F. A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi: Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. German Conference on Bioinformatics 1996: 247-250

Y. V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi: Eukaryotic promoter recognition by binding sites for transcription factors. Computer Applications in the Biosciences 11(5): 477-488 (1995)

Alexander E. Kel, Y. V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov: Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. ISMB 1995: 197-205

Victor B. Strelets, Andrey A. Ptitsyn, Luciano Milanesi, Hwa A. Lim: Data bank homology search algorithm with linear computation complexity. Computer Applications in the Biosciences 10(3): 319-322 (1994)

Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov: SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. Computer Applications in the Biosciences 9(6): 617-627 (1993)

Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi: Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Computer Applications in the Biosciences 8(6): 529-534 (1992)